A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic patterns, and more.
☆18Jul 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for peptacular
Users that are interested in peptacular are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HUPO-PSI Standardized peptidoform notation☆25Jun 9, 2026Updated 2 months ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jul 7, 2026Updated last month
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆98Nov 5, 2025Updated 9 months ago
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 4 months ago
- A label free quantification tool.☆20Jan 13, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Proteogenomics database-generation tool for protein haplotypes and variants☆12Jun 19, 2025Updated last year
- PSI-MOD ontology for modified and unmodified amino acid residues☆16Jul 31, 2026Updated last week
- Processing and analysis of proteomics data☆17Updated this week
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- Quantitative proteomics workflow☆16Sep 30, 2022Updated 3 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆50Feb 11, 2026Updated 5 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆194Jul 31, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jul 13, 2026Updated 3 weeks ago
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 3 weeks ago
- Democratizing ML in proteomics☆57Jul 27, 2026Updated 2 weeks ago
- ☆13Updated this week
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆126Jul 31, 2026Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated last week
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Updated this week
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆17Updated this week
- Collisional cross-section prediction for modified and multiconformational peptides☆14Jul 16, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.☆12Feb 11, 2025Updated last year
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆55Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Updated this week
- ET-Tox☆13Oct 4, 2024Updated last year
- Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein seq…☆19Oct 4, 2022Updated 3 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆14Jul 1, 2026Updated last month
- Assorted Python Scripts to accompany the gmx analysis tools☆12Jul 16, 2019Updated 7 years ago
- Code for peptide ligand design with machine learning models.☆35Dec 8, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Updated this week
- ☆16May 27, 2026Updated 2 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Jun 19, 2026Updated last month
- ☆39Aug 28, 2023Updated 2 years ago
- DataJoint Element for behavioral analysis with DeepLabCut☆13May 20, 2025Updated last year
- ☆15Jun 3, 2021Updated 5 years ago
- ☆16Jul 2, 2026Updated last month