MannLabs / structuremapLinks
Python package for investigating the structural context of PTMs
☆28Updated 11 months ago
Alternatives and similar repositories for structuremap
Users that are interested in structuremap are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 10 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated last week
- ☆13Updated last year
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last week
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- A Python interface to proteomics data repositories☆36Updated 6 months ago
- ☆21Updated 10 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆42Updated 6 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆94Updated last year
- A python package for fast post translational modification localization, powered by Cython.☆20Updated 2 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆90Updated last month
- Deep learning framework for proteomics☆140Updated last week
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆50Updated 2 years ago
- MS/MS prediction for peptides☆24Updated 5 years ago
- ☆67Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 weeks ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated last week
- ☆22Updated 4 years ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated last month
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- asari, metabolomics data preprocessing☆56Updated 3 weeks ago