MannLabs / structuremapLinks
Python package for investigating the structural context of PTMs
☆28Updated 9 months ago
Alternatives and similar repositories for structuremap
Users that are interested in structuremap are comparing it to the libraries listed below
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Democratizing ML in proteomics☆44Updated 2 months ago
- Deep learning framework for proteomics☆132Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- ☆20Updated 8 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last week
- R package for functionally scoring phosphorylation sites☆21Updated 5 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- MS/MS prediction for peptides☆24Updated 4 years ago
- ☆13Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated last week
- A Python interface to proteomics data repositories☆35Updated 4 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆27Updated 11 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- ☆66Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- Python package and command line tool for epitope prediction☆52Updated last year
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆45Updated 6 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆43Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 4 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- HUPO-PSI Standardized peptidoform notation☆21Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 weeks ago
- ☆14Updated last year