Highly adaptable common interface for proteomics search and de novo engines
☆48Aug 15, 2025Updated last year
Alternatives and similar repositories for searchgui
Users that are interested in searchgui are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interpretation of proteomics identification results☆55Aug 1, 2026Updated 3 weeks ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Mar 11, 2024Updated 2 years ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆13Aug 26, 2022Updated 4 years ago
- HUPO-PSI Standardized peptidoform notation☆26Aug 14, 2026Updated 2 weeks ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆142May 21, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Oct 16, 2023Updated 2 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- ☆30Jan 6, 2026Updated 7 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆56Aug 21, 2026Updated last week
- Library for mass spectrometry projects☆28Updated this week
- AutoRT: Peptide retention time prediction using deep learning☆31Jul 31, 2024Updated 2 years ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆45Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆115Updated this week
- MSDK source code repository☆41Sep 22, 2022Updated 3 years ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 4 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated 2 months ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 3 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Morpheus mass spectrometry–based proteomics database search algorithm☆21Jul 25, 2024Updated 2 years ago
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆36Aug 22, 2026Updated last week
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆246Jul 8, 2026Updated last month
- Mass spectrometry data visualization☆39Nov 30, 2020Updated 5 years ago
- Client to access ExperimentHub resources☆11Aug 19, 2026Updated last week
- Load mass spectrometry mzXML files☆18Jun 26, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/acpype☆12May 11, 2015Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Symbolic Code Algebra+Calculus system for VS Code☆33Aug 13, 2026Updated 2 weeks ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆11Sep 12, 2025Updated 11 months ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- A compiler for a Standard-ML like language that generates code suitable for embedded computers.☆11Jul 10, 2023Updated 3 years ago