Alternatives and similar repositories for searchgui

Users that are interested in searchgui are comparing it to the libraries listed below

• CompOmics / peptide-shaker
  Interpretation of proteomics identification results
  ☆50Updated last month
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆118Updated this week
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆80Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated last week
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆95Updated last week
• smith-chem-wisc / MetaMorpheus
  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
  ☆102Updated 3 weeks ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆56Updated last week
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆55Updated 2 months ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆26Updated 9 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆65Updated last year
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆47Updated this week
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆121Updated 2 months ago
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆38Updated this week
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆51Updated 2 years ago
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆36Updated 4 years ago
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆250Updated this week
• CompOmics / compomics-utilities
  Open source Java library for computational proteomics
  ☆34Updated last month
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆15Updated 4 months ago
• PayneLab / ProteomicsEducation
  ☆35Updated last month
• cschlaffner / PoGo
  PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…
  ☆11Updated 4 years ago
• CompOmics / ThermoRawFileParser
  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
  ☆223Updated last week
• percolator / percolator
  Semi-supervised learning for peptide identification from shotgun proteomics datasets
  ☆134Updated 2 months ago
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆61Updated 3 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated this week
• yafeng / proteogenomics_python
  python scripts for proteogenomics analysis
  ☆10Updated 5 years ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆44Updated 4 months ago
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆39Updated last year