Highly adaptable common interface for proteomics search and de novo engines
☆46Aug 15, 2025Updated 7 months ago
Alternatives and similar repositories for searchgui
Users that are interested in searchgui are comparing it to the libraries listed below
Sorting:
- Interpretation of proteomics identification results☆53Nov 26, 2025Updated 3 months ago
- MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.☆34Aug 25, 2020Updated 5 years ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Mar 11, 2024Updated 2 years ago
- HUPO-PSI Standardized peptidoform notation☆23Mar 13, 2026Updated last week
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144Nov 21, 2025Updated 4 months ago
- ☆15Oct 16, 2023Updated 2 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 4 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- ☆28Jan 6, 2026Updated 2 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆51Mar 12, 2026Updated last week
- Library for mass spectrometry projects☆27Mar 6, 2026Updated 2 weeks ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆63Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆100Updated this week
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆45Mar 2, 2026Updated 2 weeks ago
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markov…☆11Sep 25, 2025Updated 5 months ago
- Base Classes and Functions for Mass Spectrometry and Proteomics☆136Aug 26, 2025Updated 6 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 9 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago
- A conda-smithy repository for pymol-open-source.☆15Updated this week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Feb 23, 2024Updated 2 years ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆10Sep 12, 2025Updated 6 months ago
- Proteomics search & quantification so fast that it feels like magic☆278Mar 12, 2026Updated last week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆239Mar 7, 2026Updated 2 weeks ago
- PepQuery: a targeted peptide search engine☆15May 1, 2024Updated last year
- Mass spectrometry data visualization☆38Nov 30, 2020Updated 5 years ago
- Load mass spectrometry mzXML files☆17Jul 14, 2022Updated 3 years ago
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 4 months ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆41Updated this week
- Morpheus mass spectrometry–based proteomics database search algorithm☆21Jul 25, 2024Updated last year
- ☆14Jan 27, 2022Updated 4 years ago
- Automatically exported from code.google.com/p/acpype☆12May 11, 2015Updated 10 years ago
- ☆13Jun 5, 2024Updated last year
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 3 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 2 years ago
- Proteome Generator☆10Apr 18, 2019Updated 6 years ago