bzhanglab / deep_learning_in_proteomicsLinks
A list of tools on proteomics using deep learning
☆106Updated last year
Alternatives and similar repositories for deep_learning_in_proteomics
Users that are interested in deep_learning_in_proteomics are comparing it to the libraries listed below
Sorting:
- Deep learning framework for proteomics☆137Updated 3 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated 3 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 5 months ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆72Updated 2 months ago
- A collection of available Python tools for Proteomics analysis☆63Updated 6 years ago
- Democratizing ML in proteomics☆50Updated 3 weeks ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆167Updated last week
- modular & open DIA search☆93Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated 3 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated 2 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- Infrastructure of AlphaX ecosystem☆50Updated this week
- A deep learning toolkit for mass spectrometry☆85Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 5 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- Report processing and protein quantification for MS-based proteomics☆50Updated 2 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated last month
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆143Updated last week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆21Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month