bzhanglab / deep_learning_in_proteomicsLinks
A list of tools on proteomics using deep learning
☆106Updated last year
Alternatives and similar repositories for deep_learning_in_proteomics
Users that are interested in deep_learning_in_proteomics are comparing it to the libraries listed below
Sorting:
- Deep learning framework for proteomics☆132Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 4 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆76Updated last week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆164Updated last week
- A collection of available Python tools for Proteomics analysis☆62Updated 6 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 weeks ago
- modular & open DIA search☆88Updated this week
- Democratizing ML in proteomics☆44Updated last week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆91Updated 2 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Infrastructure of AlphaX ecosystem☆49Updated last week
- A deep learning toolkit for mass spectrometry☆84Updated last week
- Report processing and protein quantification for MS-based proteomics☆49Updated 2 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated 3 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated 3 weeks ago
- A cross-platform proteomics data analysis suite☆265Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Updated 2 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated last month
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated last year
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last month
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆21Updated 4 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆103Updated 2 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆120Updated 2 weeks ago