Alternatives and similar repositories for deep_learning_in_proteomics

Users that are interested in deep_learning_in_proteomics are comparing it to the libraries listed below

• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆129Updated 3 weeks ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆83Updated 4 months ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆120Updated last month
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆68Updated 3 weeks ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆149Updated last week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆39Updated last week
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 4 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆73Updated this week
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆58Updated 6 years ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆88Updated last month
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆58Updated 3 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆46Updated last week
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆70Updated last week
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆81Updated last year
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆79Updated 3 years ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆46Updated 2 years ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 4 months ago
• pFindStudio / pGlyco3
  ☆20Updated 5 months ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated last month
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆39Updated 9 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆47Updated 5 months ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆42Updated 2 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆80Updated last year
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 6 months ago
• gagneurlab / spectralis
  ☆14Updated 10 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆88Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated last week
• Superzchen / iLearnPlus
  iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…
  ☆112Updated last year
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆39Updated last month