bzhanglab / deep_learning_in_proteomicsLinks
A list of tools on proteomics using deep learning
☆106Updated last year
Alternatives and similar repositories for deep_learning_in_proteomics
Users that are interested in deep_learning_in_proteomics are comparing it to the libraries listed below
Sorting:
- Deep learning framework for proteomics☆140Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆123Updated 5 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆90Updated last month
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated last week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆172Updated this week
- modular & open DIA search☆96Updated this week
- A collection of available Python tools for Proteomics analysis☆65Updated 6 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- Democratizing ML in proteomics☆51Updated 3 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆78Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 3 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- A deep learning toolkit for mass spectrometry☆86Updated last week
- Report processing and protein quantification for MS-based proteomics☆50Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆82Updated 2 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated last week
- ☆21Updated 10 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆233Updated last month
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆42Updated 6 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 6 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- A cross-platform proteomics data analysis suite☆268Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆147Updated this week