A list of tools on proteomics using deep learning
☆108May 5, 2024Updated last year
Alternatives and similar repositories for deep_learning_in_proteomics
Users that are interested in deep_learning_in_proteomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last month
- Deep learning framework for proteomics☆151Apr 21, 2026Updated last week
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Updated this week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A deep learning toolkit for mass spectrometry☆89Jan 7, 2026Updated 3 months ago
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Apr 8, 2026Updated 3 weeks ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated last year
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆47Updated this week
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Apr 21, 2026Updated last week
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 2 months ago
- Proteomics search & quantification so fast that it feels like magic☆288Apr 21, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Apr 21, 2026Updated last week
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- An LC-MS/MS glycan and glycopeptide search engine☆14Sep 15, 2025Updated 7 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Apr 13, 2026Updated 3 weeks ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144Apr 27, 2026Updated last week
- ☆21Feb 14, 2025Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆126Apr 19, 2026Updated 2 weeks ago
- Python framework for Deep Learning in Proteomics☆40Apr 14, 2026Updated 3 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- ☆12Jun 13, 2024Updated last year
- GlyCombo, a combinatorial glycan composition assignment tool☆12Apr 10, 2026Updated 3 weeks ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆31Mar 27, 2026Updated last month
- ☆70May 7, 2024Updated last year
- ☆15Apr 27, 2022Updated 4 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆130Mar 23, 2026Updated last month
- A cross-platform proteomics data analysis suite☆293Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Jan 6, 2022Updated 4 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆87Nov 21, 2025Updated 5 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆52Updated this week
- A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.☆11May 28, 2022Updated 3 years ago
- A tool for large scale omics datasets evaluation☆24Jun 14, 2023Updated 2 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago