Alternatives and similar repositories for annotator

Users that are interested in annotator are comparing it to the libraries listed below

• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly
  ☆35Updated last week
• MannLabs / timsrust
  ☆28Updated 5 months ago
• pFindStudio / pGlyco3
  ☆20Updated 8 months ago
• singjc / redeem
  Repository for Deep Learning Models for Mass Spectrometry written in Rust
  ☆14Updated 4 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 8 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆48Updated last week
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆21Updated last month
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated 8 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 9 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated this week
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆25Updated last year
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆45Updated 6 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆44Updated 2 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated 7 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated last month
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆49Updated last week
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆132Updated last month
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆15Updated 3 weeks ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆22Updated 3 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 4 months ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 3 weeks ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated last month
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆81Updated last week
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆121Updated 4 months ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 4 months ago