Alternatives and similar repositories for pGlyco3

Users that are interested in pGlyco3 are comparing it to the libraries listed below

• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆131Updated 2 weeks ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆48Updated 2 weeks ago
• mobiusklein / glycresoft
  An LC-MS/MS glycan and glycopeptide search engine
  ☆13Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated 3 weeks ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated 2 weeks ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆45Updated 6 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 8 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 6 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆86Updated 3 weeks ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆90Updated 3 weeks ago
• gagneurlab / spectralis
  ☆14Updated 11 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆48Updated 2 weeks ago
• MannLabs / alphadia
  modular & open DIA search
  ☆75Updated this week
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆50Updated 7 months ago
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆30Updated last month
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆39Updated 2 months ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆104Updated last year
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆61Updated 3 months ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆73Updated 2 weeks ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated last week
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆20Updated last week
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆55Updated 2 weeks ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆121Updated 2 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆65Updated last year
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated 7 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago