Learning structural motif representations for efficient protein structure search
☆20May 2, 2017Updated 9 years ago
Alternatives and similar repositories for DeepFold
Users that are interested in DeepFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- Stein Variational Policy Gradient for REINFORCE☆18Jul 12, 2017Updated 9 years ago
- DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction☆18Oct 2, 2025Updated 10 months ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 4 years ago
- ☆19Oct 8, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- inferring RBP binding sites and motifs using local and global CNNs☆20Sep 29, 2019Updated 6 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- The java implementation of the MMTF API, decoder and encoder.☆12Dec 19, 2025Updated 8 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- ☆13Jun 14, 2026Updated 2 months ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆16Jul 19, 2025Updated last year
- D. E. Shaw Research Technical Reports☆13Jul 4, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Jul 5, 2019Updated 7 years ago
- Chemically Directed Atom Swap Hopping -- Crystal structure prediction by swapping atoms in unfavourable chemical environments☆22Apr 19, 2023Updated 3 years ago
- ☆25Nov 14, 2025Updated 9 months ago
- ☆33Feb 27, 2026Updated 6 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 5 years ago
- ☆12May 24, 2026Updated 3 months ago
- A Java library for handling text and BinaryCIF files.☆14Jan 13, 2026Updated 7 months ago
- Deep Learning tools For Biology☆10Apr 18, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Retrieve and explore data from the ecological interactions database MANGAL☆16Jan 22, 2026Updated 7 months ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 3 years ago
- ☆12Mar 23, 2026Updated 5 months ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 7 years ago
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 5 years ago
- Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project☆15Jun 6, 2025Updated last year
- This repo is deprecated. I move the work to support molstar in nglview: https://github.com/nglviewer/nglview☆12Dec 3, 2024Updated last year
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- ☆13Sep 2, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tensorflow implementation of Spatial VAE via Matrix-Variate Normal Distributions☆15May 24, 2017Updated 9 years ago
- Robuast Variational Autoencoder☆11Jun 7, 2021Updated 5 years ago
- Python package for handling IHM mmCIF and BinaryCIF files☆18Updated this week
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago
- Analysis of results of the Data Science Bowl 2018☆22Jun 16, 2020Updated 6 years ago
- Gene Expression Imputation with Generative Adversarial Imputation Nets☆13Mar 25, 2023Updated 3 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 7 months ago