Learning structural motif representations for efficient protein structure search
☆20May 2, 2017Updated 8 years ago
Alternatives and similar repositories for DeepFold
Users that are interested in DeepFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- Stein Variational Policy Gradient for REINFORCE☆18Jul 12, 2017Updated 8 years ago
- Benchmarks for Primitive Collections☆13Apr 4, 2023Updated 3 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction☆18Oct 2, 2025Updated 6 months ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- ☆19Oct 8, 2020Updated 5 years ago
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆14Jul 19, 2025Updated 8 months ago
- The java implementation of the MMTF API, decoder and encoder.☆11Dec 19, 2025Updated 3 months ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- inferring RBP binding sites and motifs using local and global CNNs☆19Sep 29, 2019Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🎶 Create sounds, notes, and music with machine learning algorithms interactively.☆16Dec 31, 2022Updated 3 years ago
- Ice gradient estimation for cryoEM☆11Oct 11, 2024Updated last year
- ☆13Jul 5, 2019Updated 6 years ago
- Sparse Fourier Backpropagation in Cryo-EM Reconstruction☆12Dec 3, 2023Updated 2 years ago
- ☆14Apr 1, 2026Updated last week
- D. E. Shaw Research Technical Reports☆13Jul 4, 2022Updated 3 years ago
- Chemically Directed Atom Swap Hopping -- Crystal structure prediction by swapping atoms in unfavourable chemical environments☆22Apr 19, 2023Updated 2 years ago
- Using LSTM's to learn musical gestures on the Roli Lightpad and collaboratively generate new movements in real-time☆22Dec 19, 2017Updated 8 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Just another implementation of FiLM in PyTorch☆14Nov 2, 2017Updated 8 years ago
- A Java library for handling text and BinaryCIF files.☆13Jan 13, 2026Updated 2 months ago
- Deep Learning tools For Biology☆10Apr 18, 2022Updated 3 years ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 2 years ago
- A CTF Simulation Web App☆13Aug 6, 2025Updated 8 months ago
- ☆12Mar 23, 2026Updated 2 weeks ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- Python package for handling IHM mmCIF and BinaryCIF files☆18Apr 3, 2026Updated last week
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆33May 23, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Tensorflow implementation of Spatial VAE via Matrix-Variate Normal Distributions☆14May 24, 2017Updated 8 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- ☆17Aug 10, 2020Updated 5 years ago
- Provides a heteroscedastic noise latent for a sparse variational Gaussian process using GPflow☆13Nov 11, 2020Updated 5 years ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago