GuyTeichman / RNAlysisLinks
Analyze your RNA sequencing data without writing a single line of code
☆135Updated this week
Alternatives and similar repositories for RNAlysis
Users that are interested in RNAlysis are comparing it to the libraries listed below
Sorting:
- Tool for plotting sequencing data along genomic coordinates.☆294Updated 2 weeks ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆161Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated 6 months ago
- Download FASTQ files from SRA or ENA repositories.☆330Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆82Updated 2 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- Generate IGV style locus tracks from bigWig files in R☆162Updated 7 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆329Updated 3 months ago
- Example genomics data for tool developers☆112Updated 10 months ago
- Short lessons from FAS Informatics coffee hour☆151Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆175Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- Step-by-step analysis pipeline for RNA-seq data☆119Updated last year
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- coding exercise using TCGA immune infiltration data☆45Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆210Updated last week
- Application for making ENCODE Blacklists☆309Updated 4 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆146Updated this week
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 9 months ago
- Module for embedding igv.js in an IPython notebook☆75Updated 3 months ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- parallel fastq-dump wrapper☆295Updated 2 years ago