MaayanLab / Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
☆102Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Zika-RNAseq-Pipeline
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 8 years ago
- Transcript quantification import for modular pipelines☆136Updated 7 months ago
- RNA-seq data analysis practical☆60Updated 10 years ago
- ☆68Updated 2 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆147Updated last year
- R package for analyzing single-cell RNA-seq data☆173Updated 8 months ago
- Tutorials on accessing public reference and genomic data☆29Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- New user☆42Updated 4 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆200Updated 2 weeks ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- Issue tracker for the Biostar Handbook☆57Updated 2 years ago
- ☆60Updated 4 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆77Updated 8 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated last year
- RNA-Seq analysis workflow☆105Updated 3 years ago
- Code for biostar tutorials - mostly R and Perl☆50Updated 3 months ago
- A short tutorial on how to use RSEM☆134Updated 4 years ago
- DE analysis module for Week3☆66Updated 8 years ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 8 years ago
- Integrated Differential Expression and Pathway analysis☆126Updated 2 weeks ago
- RNA-seq workflow: exploratory analysis and differential expression☆71Updated last year
- chromatin Variability Across Regions (of the genome!)☆159Updated 4 months ago
- microRNA profiling pipeline☆73Updated 2 years ago
- website for the rnaseq course☆93Updated this week
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆107Updated 5 years ago
- ATAC-seq and DNase-seq processing pipeline☆162Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆208Updated 5 months ago
- R package for bcbio RNA-seq analysis.☆58Updated 2 months ago
- Materials for Genomics Data Science: Introduction to Bioconductor☆92Updated 4 months ago