An efficient way to guess the library type of your RNA-Seq data.
☆34Oct 11, 2022Updated 4 years ago
Alternatives and similar repositories for GUESSmyLT
Users that are interested in GUESSmyLT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- ☆11Mar 31, 2025Updated last year
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Transcription Factor Co-Occurrence using Market Basket analysis☆20Jul 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- deploy a snakemake pipeline directly from version control (under development)☆28Oct 28, 2026Updated last week
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆11Apr 28, 2026Updated 6 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆47Jan 28, 2026Updated 9 months ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 5 years ago
- Presentation at the Single Cell Nanocourse in Spring 2017 at Harvard Medical School☆10Mar 7, 2017Updated 9 years ago
- Nextflow workflow template repository☆20Jul 29, 2026Updated 3 months ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 10 months ago
- Carpentries lesson materials for the ROAR (Robust and Open Analysis in R) workshop☆16Aug 25, 2023Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 10 months ago
- a lexicographically-based GTF/GFF sorter☆39Aug 8, 2026Updated 2 months ago
- ☆10Aug 29, 2012Updated 14 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆20Oct 16, 2026Updated 3 weeks ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Apr 1, 2024Updated 2 years ago
- ☆16Jul 7, 2025Updated last year
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆13Aug 24, 2026Updated 2 months ago
- Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease☆22Oct 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- Predicting transcription factor binding in single cells through deep learning☆15Oct 14, 2022Updated 4 years ago
- ☆13Mar 12, 2020Updated 6 years ago
- Short lessons, training various Research Software Engineering tools useful to our work.☆14Updated this week
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- ☆12Sep 10, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.☆12Feb 5, 2025Updated last year
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- Sequence Generation for Differential Expression Analysis and Beyond☆11May 15, 2024Updated 2 years ago
- ☆16Apr 2, 2024Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆24Aug 2, 2022Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆67Mar 14, 2024Updated 2 years ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago