urmi-21 / pyrpipeLinks
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
☆84Updated 4 years ago
Alternatives and similar repositories for pyrpipe
Users that are interested in pyrpipe are comparing it to the libraries listed below
Sorting:
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 11 months ago
- Python biomart API☆69Updated 2 years ago
- Normalization of RNA-seq gene expression☆101Updated 4 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 5 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated last month
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆88Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆73Updated 2 weeks ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 8 months ago
- Alternative splicing resource☆57Updated 7 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago
- Microbial analysis in TCGA data☆92Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆147Updated last year
- machine-readable file format for genomic library sequence and structure☆123Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 4 years ago
- liftover for python, made fast with cython☆92Updated last month
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 3 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 weeks ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last week