Alternatives and similar repositories for pyrpipe:

Users that are interested in pyrpipe are comparing it to the libraries listed below

• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆64Updated last year
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆29Updated 3 years ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated last week
• hbc / NGS_Data_Analysis_Course
  ☆23Updated 8 years ago
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆83Updated 3 weeks ago
• fengzhanglab / Screening_Protocols_manuscript
  Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
  ☆46Updated 7 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆47Updated last year
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated last year
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 3 years ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆44Updated last year
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆123Updated 6 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆51Updated last month
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated last year
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆118Updated 3 weeks ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆43Updated 2 years ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 5 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆100Updated 3 months ago
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆68Updated 7 months ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆90Updated 11 months ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆25Updated last month
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆16Updated last month
• hms-dbmi / 3d-genome-processing-tutorial
  A 3D genome data processing tutorial for ISMB/ECCB 2017
  ☆50Updated 7 years ago
• YichaoOU / HemTools
  HemTools: a collection of NGS pipelines and bioinformatic analyses
  ☆68Updated this week
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆95Updated 3 weeks ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆91Updated 6 months ago
• mpg-age-bioinformatics / AGEpy
  Bioinformatics tools for Python
  ☆24Updated 2 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆119Updated 2 years ago