urmi-21 / pyrpipeLinks
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
☆84Updated 4 years ago
Alternatives and similar repositories for pyrpipe
Users that are interested in pyrpipe are comparing it to the libraries listed below
Sorting:
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Normalization of RNA-seq gene expression☆92Updated last month
- Notes on ChIP-seq and other-seq-related tools☆26Updated 3 weeks ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Parsing tools for GTF (gene transfer format) files☆121Updated 5 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Quantification of transposable element expression using RNA-seq☆73Updated last year
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆72Updated last week
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆59Updated this week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆64Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- Python biomart API☆67Updated 2 years ago
- Microbial analysis in TCGA data☆91Updated last year
- Alternative splicing resource☆56Updated 7 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆105Updated 2 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆30Updated 3 weeks ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- coding exercise using TCGA immune infiltration data☆45Updated last year
- Tools for working with BUS files☆101Updated 2 months ago
- machine-readable file format for genomic library sequence and structure☆121Updated 2 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- code to run sei and obtain sei and sequence class predictions☆106Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated 3 weeks ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆111Updated 11 months ago