urmi-21 / pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
☆81Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for pyrpipe
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆94Updated last week
- Microbial analysis in TCGA data☆89Updated 8 months ago
- machine-readable file format for genomic library sequence and structure☆114Updated 2 weeks ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- Publication quality NGS track plotting☆108Updated 2 years ago
- Normalization of RNA-seq gene expression☆70Updated 11 months ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Porting DESeq2 into python via rpy2☆67Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆121Updated 3 months ago
- coding exercise using TCGA immune infiltration data☆43Updated 9 months ago
- Notes on ChIP-seq and other-seq-related tools☆22Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆104Updated 3 weeks ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆39Updated last year
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- Detection of m6A from direct RNA-Seq data☆108Updated 2 months ago
- Tools for working with BUS files☆92Updated last month
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆107Updated 2 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆88Updated 3 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆30Updated last month
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆30Updated 4 years ago
- Fast and flexible ORF finder☆62Updated 2 years ago
- A modular Hi-C mapping pipeline☆87Updated 11 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆106Updated this week
- Alternative splicing resource☆51Updated 6 years ago