gexijin / iDEP-old-versionLinks
iDEP: integrated Differential Expression & Pathway analysis
☆14Updated 6 years ago
Alternatives and similar repositories for iDEP-old-version
Users that are interested in iDEP-old-version are comparing it to the libraries listed below
Sorting:
- Template for building a bioconductor workshop package using github actions☆21Updated 7 months ago
- DEAPP shiny App☆30Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Reproducible GSEA Benchmarking☆14Updated 3 months ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- Bioinformatics course (WSBIM1322)☆17Updated 3 weeks ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 9 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Updated 4 months ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- ☆10Updated last year
- Application for hosting gene expression and ontology data with Shiny☆17Updated 8 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆40Updated last week
- Introduction to the Bioconductor project☆19Updated 3 months ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- ☆28Updated 7 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- This is the ensembldb development repository.☆36Updated 5 months ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Gene network analysis☆19Updated 3 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Helper script for bioconductor/bioconductor_docker☆13Updated this week
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago