iDEP: integrated Differential Expression & Pathway analysis
☆14Mar 1, 2019Updated 7 years ago
Alternatives and similar repositories for iDEP-old-version
Users that are interested in iDEP-old-version are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Application for hosting gene expression and ontology data with Shiny☆17Jan 8, 2018Updated 8 years ago
- Library of snakemake rules.☆12Oct 2, 2018Updated 7 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆19Dec 9, 2020Updated 5 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Jan 30, 2026Updated last month
- Differential Count Data Analysis Toolbox☆61Feb 5, 2024Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Mar 24, 2021Updated 5 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆22Jun 27, 2017Updated 8 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- Phylogenetic, Distance and Other Calculations on VCF and Fasta Files☆28Feb 2, 2026Updated last month
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 5 months ago
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Mar 5, 2021Updated 5 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 8 years ago
- ☆13Sep 22, 2017Updated 8 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 8, 2024Updated last year
- Moderator Templates for https://www.biostars.org/☆11Apr 15, 2021Updated 4 years ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- Statistical Computing☆11Jan 24, 2025Updated last year
- Simple pagination app that saves your time.☆10Mar 9, 2020Updated 6 years ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Feb 20, 2020Updated 6 years ago
- ☆16Mar 16, 2017Updated 9 years ago
- Mapping of GENCODE gene annotation set files to older assembies☆13Aug 7, 2023Updated 2 years ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jan 14, 2026Updated 2 months ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Oct 17, 2025Updated 5 months ago
- A talk on Makesfiles in bioinformatics☆26Jul 18, 2013Updated 12 years ago
- GraphBio: a shiny web app to easily perform popular visualization analysis for omics data☆33Jul 14, 2023Updated 2 years ago
- ☆11Feb 9, 2025Updated last year
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Feb 10, 2023Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)☆43May 7, 2021Updated 4 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- DEAPP shiny App☆30Jun 8, 2022Updated 3 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆87Nov 11, 2020Updated 5 years ago
- Integrated Differential Expression and Pathway analysis☆137Feb 27, 2026Updated 3 weeks ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 10 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- ☆18Jun 11, 2024Updated last year
- Interactive Visual Analysis of differential gene expression test results☆22Jan 9, 2017Updated 9 years ago