Analysis pipelines for QTL discovery and GWAS signals interpretation
☆12Sep 3, 2024Updated last year
Alternatives and similar repositories for population-compare-pipeline
Users that are interested in population-compare-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for next generation sequencing analyses☆15Jun 29, 2026Updated last week
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- ☆11Apr 25, 2026Updated 2 months ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Jan 30, 2025Updated last year
- ☆15Apr 20, 2021Updated 5 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- Fast manhattenplots using ggplot2☆13Apr 24, 2026Updated 2 months ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Brain-related -omics data☆28Mar 21, 2026Updated 3 months ago
- ☆20Oct 4, 2023Updated 2 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Jun 16, 2023Updated 3 years ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- ☆26Oct 27, 2017Updated 8 years ago
- An introductory workshop to GWAS analysis using PLINK and R☆15Sep 15, 2015Updated 10 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- ☆26Jan 8, 2026Updated 6 months ago
- https://filippob.github.io/introduction_to_gwas/☆22Jun 8, 2026Updated last month
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cross-population analysis using GWAS summary statistics☆20Jun 25, 2024Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆30Aug 2, 2022Updated 3 years ago
- GWAS for survival analysis in large cohorts☆24Jul 24, 2024Updated last year
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 5 months ago
- ☆21Nov 15, 2024Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 8 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package 📦 for handy functions when working with GWAS (summary) data☆17Jul 29, 2019Updated 6 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated 3 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 10 months ago
- ☆16Dec 7, 2020Updated 5 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆56Jan 16, 2025Updated last year
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago