liusihan / population-compare-pipeline
Analysis pipelines for QTL discovery and GWAS signals interpretation
☆9Updated 2 weeks ago
Related projects: ⓘ
- ☆16Updated 4 months ago
- Fine-mapping with infinitesimal effects☆13Updated 6 months ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆12Updated 2 years ago
- GWAS genetics Fine-mapping method☆15Updated 4 months ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆11Updated 5 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- Transcriptome-wide association study of Major Depressive Disorder☆12Updated 4 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆10Updated 2 months ago
- ☆19Updated 4 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆17Updated 2 years ago
- ☆14Updated 3 years ago
- Integration of TWAS and Colocalization Analysis☆11Updated 5 months ago
- PredictDB Pipeline for GTEx v7 data☆18Updated last year
- SCALLOP-INF analysis☆18Updated last week
- ☆16Updated 11 months ago
- Regression with Summary Statistics exploiting Network Topology.☆18Updated this week
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆14Updated 2 weeks ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆29Updated 5 months ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆16Updated 4 months ago
- Workflow for performing cistrome-wide associations studies☆9Updated 2 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆21Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- ☆12Updated 3 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆14Updated 4 months ago
- A collection of perl scripts for NGS analysis☆10Updated 4 months ago
- single cell and bulk RNASeq analysis scripts☆10Updated 2 years ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆15Updated 4 years ago
- ☆13Updated 11 months ago
- ☆9Updated 2 months ago
- ☆10Updated 2 years ago