Porting DESeq2 into python via rpy2
☆67Jun 1, 2023Updated 2 years ago
Alternatives and similar repositories for diffexpr
Users that are interested in diffexpr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆747Updated this week
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated 10 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆86Jun 4, 2021Updated 4 years ago
- Analyze your RNA sequencing data without writing a single line of code☆141Jun 4, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 6 months ago
- scoreCT: Automated Cell Type Annotation☆16Apr 18, 2022Updated 4 years ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 3 years ago
- Universal RObust Peak Annotator☆16Dec 19, 2023Updated 2 years ago
- Pandas ExtensionDtypes for dealing with genomics data☆48May 29, 2025Updated 11 months ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- Gene Set Enrichment Analysis in Python☆696Updated this week
- Shell bootloader for data science.☆10Updated this week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆127Apr 10, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.☆30Updated this week
- A Python library to work with high-throughput sequencing data in the context of data integration☆14May 24, 2017Updated 8 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆55Apr 20, 2024Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆35Oct 27, 2018Updated 7 years ago
- bioinformatics visualization tools with pyviz/bokeh☆20Sep 30, 2023Updated 2 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- ☆17Apr 9, 2021Updated 5 years ago
- Bioinformatics data analysis and visualization toolkit☆365May 24, 2024Updated last year
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆16Nov 11, 2022Updated 3 years ago
- Legend made easy for matplotlib☆36Apr 12, 2026Updated 2 weeks ago
- Generate Dose-Response Curves in Python☆13Mar 4, 2026Updated last month
- Python3 package for plotting Venn diagrams (up to 4 sets)☆24Sep 2, 2024Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆355Dec 9, 2025Updated 4 months ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆33Apr 19, 2020Updated 6 years ago
- Processing and plotting tools for genomics data☆22Apr 15, 2026Updated 2 weeks ago
- genes and genomes at your fingertips☆411Mar 5, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An interactive image processing program for biologists written in Python.☆25Mar 4, 2026Updated last month
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51Jan 18, 2023Updated 3 years ago
- ☆18May 31, 2024Updated last year
- A Python implementation of edgeR for differential expression analysis☆104Mar 21, 2019Updated 7 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆878Jul 10, 2024Updated last year
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated 9 months ago