Alternatives and similar repositories for diffexpr:

Users that are interested in diffexpr are comparing it to the libraries listed below

• scverse / scanpy_usage
  Scanpy use cases.
  ☆79Updated 4 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆93Updated 2 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆141Updated 10 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆120Updated 7 months ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆57Updated 10 months ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆113Updated this week
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆100Updated 2 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆82Updated 3 years ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆109Updated 2 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆162Updated 6 months ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆90Updated 5 months ago
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆80Updated last year
• tavareshugo / tutorial_DESeq2_contrasts
  ☆57Updated 8 months ago
• AllonKleinLab / SPRING
  ☆68Updated 6 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆83Updated 6 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated last year
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆116Updated 2 years ago
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆85Updated last year
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆134Updated last week
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆116Updated this week
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆122Updated 4 months ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆53Updated 7 months ago
• velocyto-team / velocyto-notebooks
  ☆55Updated 6 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆68Updated last year
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 4 years ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆90Updated 4 years ago