wckdouglas / diffexprLinks
Porting DESeq2 into python via rpy2
☆67Updated 2 years ago
Alternatives and similar repositories for diffexpr
Users that are interested in diffexpr are comparing it to the libraries listed below
Sorting:
- Normalization of RNA-seq gene expression☆104Updated 6 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆123Updated 3 months ago
- Python biomart API☆69Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- machine-readable file format for genomic library sequence and structure☆126Updated 4 months ago
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- Tools for working with BUS files☆102Updated 7 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆182Updated last week
- Fast-ish (and correct!) quantile normalization in Python.☆31Updated 7 months ago
- Jupyter notebook based genomic data visualization toolkit.☆249Updated last month
- Parsing tools for GTF (gene transfer format) files☆125Updated 10 months ago
- liftover for python, made fast with cython☆95Updated 3 months ago
- A python extension for quick access to bigWig and bigBed files☆239Updated this week
- Analyze your RNA sequencing data without writing a single line of code☆139Updated 7 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 2 months ago
- MOODS: Motif Occurrence Detection Suite☆112Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 7 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated last week
- Updated DANPOS2 to work with python3☆23Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆167Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆206Updated 2 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A modular Hi-C mapping pipeline☆100Updated last year
- Scanpy use cases.☆88Updated 5 years ago
- R package to access DoRothEA's regulons☆153Updated last year