wckdouglas / diffexpr

Related projects ⓘ

Alternatives and complementary repositories for diffexpr

• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated last year
• BUStools / bustools
  Tools for working with BUS files
  ☆92Updated last month
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆70Updated 11 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆114Updated 2 weeks ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆99Updated last year
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆81Updated 3 years ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆108Updated 2 years ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆77Updated 4 years ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆88Updated 3 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆133Updated 8 months ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆115Updated 2 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆94Updated last week
• timoast / sinto
  Tools for single-cell data processing
  ☆118Updated 5 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 4 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆121Updated 3 months ago
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆110Updated 11 months ago
• sebriois / biomart
  Python biomart API
  ☆63Updated last year
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆56Updated 8 months ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆122Updated 4 years ago
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆118Updated 6 years ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆123Updated 2 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆115Updated 2 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆102Updated 3 weeks ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆98Updated 3 weeks ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆68Updated last year
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆96Updated 5 years ago
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 8 years ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆30Updated last month