wckdouglas / diffexprLinks
Porting DESeq2 into python via rpy2
☆67Updated 2 years ago
Alternatives and similar repositories for diffexpr
Users that are interested in diffexpr are comparing it to the libraries listed below
Sorting:
- Normalization of RNA-seq gene expression☆102Updated 5 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆182Updated last month
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- machine-readable file format for genomic library sequence and structure☆126Updated 3 months ago
- Python biomart API☆69Updated 2 years ago
- Tools for working with BUS files☆102Updated 6 months ago
- Parsing tools for GTF (gene transfer format) files☆122Updated 9 months ago
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Updated 6 months ago
- Jupyter notebook based genomic data visualization toolkit.☆249Updated 3 weeks ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated last month
- A python extension for quick access to bigWig and bigBed files☆238Updated 11 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated 3 weeks ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆242Updated last week
- Differential expression analysis for single-cell RNA-seq data.☆205Updated 2 months ago
- Scanpy use cases.☆86Updated 5 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last week
- Analyze your RNA sequencing data without writing a single line of code☆139Updated 6 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆109Updated last month
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- R package to access DoRothEA's regulons☆152Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Updated 2 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 2 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆95Updated 11 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago