wckdouglas / diffexprLinks
Porting DESeq2 into python via rpy2
☆67Updated 2 years ago
Alternatives and similar repositories for diffexpr
Users that are interested in diffexpr are comparing it to the libraries listed below
Sorting:
- Normalization of RNA-seq gene expression☆105Updated 6 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A simple pythonic interface to biomart.☆57Updated 6 years ago
- Python biomart API☆69Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆124Updated 4 months ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆181Updated 2 weeks ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Updated 8 months ago
- Parsing tools for GTF (gene transfer format) files☆125Updated 11 months ago
- Tools for working with BUS files☆102Updated 8 months ago
- machine-readable file format for genomic library sequence and structure☆126Updated 5 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- A python extension for quick access to bigWig and bigBed files☆239Updated 3 weeks ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆249Updated 2 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- MOODS: Motif Occurrence Detection Suite☆113Updated 2 years ago
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated this week
- Scanpy use cases.☆90Updated 5 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 3 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Updated 6 years ago
- Updated DANPOS2 to work with python3☆24Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆206Updated 3 months ago
- ☆40Updated 3 years ago
- Tools for single-cell data processing☆132Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆201Updated 5 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆111Updated 2 months ago