wckdouglas / diffexprLinks
Porting DESeq2 into python via rpy2
☆68Updated 2 years ago
Alternatives and similar repositories for diffexpr
Users that are interested in diffexpr are comparing it to the libraries listed below
Sorting:
- Normalization of RNA-seq gene expression☆92Updated last month
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 5 months ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆167Updated 2 months ago
- Python biomart API☆68Updated 2 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Updated 2 months ago
- Tools for working with BUS files☆101Updated 2 months ago
- machine-readable file format for genomic library sequence and structure☆121Updated this week
- Jupyter notebook based genomic data visualization toolkit.☆246Updated 4 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Analyze your RNA sequencing data without writing a single line of code☆138Updated 2 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 9 months ago
- Scanpy use cases.☆86Updated 4 years ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆165Updated 3 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆94Updated 6 years ago
- MOODS: Motif Occurrence Detection Suite☆105Updated 2 years ago
- Updated DANPOS2 to work with python3☆21Updated last year
- ☆69Updated 7 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆146Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆139Updated last year
- bioinformatics plotting and tools☆59Updated last year
- R package to access DoRothEA's regulons☆149Updated last year