DarkoMedin / Oncology---RNAseq-Differential-Expression-Bioinformatics
A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'EnhancedVolcano'
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Oncology---RNAseq-Differential-Expression-Bioinformatics
- ☆22Updated this week
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆16Updated 2 months ago
- Deep learning model to predict degron sequences☆18Updated last year
- A web application for finding and comparing bioinformatics training materials on GitHub and GitLab☆35Updated last week
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆24Updated 7 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated 3 months ago
- Programming for Biology 2019☆38Updated 2 years ago
- Python package and command line tool for epitope prediction☆48Updated 3 months ago
- a pipeline to build similarity maps of protein space☆30Updated 3 months ago
- coding exercise using TCGA immune infiltration data☆43Updated 9 months ago
- ☆18Updated 2 weeks ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆21Updated 5 years ago
- Comprehensive Python client for the Uniprot REST API☆44Updated 2 months ago
- Student course material for the Applied Bioinformatics course at Scripps Research☆35Updated 2 years ago
- Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…☆54Updated this week
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆79Updated 9 months ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 6 years ago
- Machine Learning in Medical Bioinformatics☆21Updated 6 months ago
- Code for LazyAF pipeline☆21Updated 8 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated last week
- Code repository for the book "Python for the Life Sciences" by Lancaster & Webster☆28Updated 4 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆26Updated 8 months ago
- ☆38Updated last month
- repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training☆54Updated last month
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆28Updated 7 months ago
- Analysis for "Amiloride, an old diuretic drug, is a potential therapeutic agent for multiple myeloma"☆16Updated this week
- ☆72Updated last month
- Functional Embedding of Gene Signatures☆36Updated 8 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated 11 months ago