ygidtu / trackplotLinks
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
☆99Updated 2 months ago
Alternatives and similar repositories for trackplot
Users that are interested in trackplot are comparing it to the libraries listed below
Sorting:
- ☆60Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ☆64Updated 4 months ago
- Quantification of transposable element expression using RNA-seq☆82Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆124Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 2 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated last week
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆92Updated 3 months ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- ☆11Updated last month
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆65Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- ☆49Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- Docker for 4DN Hi-C processing pipeline☆61Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Updated 6 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆40Updated last year