ygidtu / trackplotLinks
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
☆97Updated 3 months ago
Alternatives and similar repositories for trackplot
Users that are interested in trackplot are comparing it to the libraries listed below
Sorting:
- ☆62Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 10 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- ☆58Updated last month
- Extract 3D contacts (.pairs) from sequencing alignments☆115Updated last week
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- Quantification of transposable element expression using RNA-seq☆74Updated last year
- Allele-specific alignment sorting☆58Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Software for Quantifying Interspersed Repeat Expression☆61Updated 3 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated last week
- Somatic structural variant caller for long-read data☆79Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆79Updated 3 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆85Updated 2 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 3 weeks ago
- Tools for analyzing DNA methylation data☆43Updated last week
- HiC uniform processing pipeline☆60Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆134Updated this week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 6 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆28Updated 6 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 2 years ago