ygidtu / trackplotLinks
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
☆99Updated 3 weeks ago
Alternatives and similar repositories for trackplot
Users that are interested in trackplot are comparing it to the libraries listed below
Sorting:
- ☆64Updated 3 months ago
- ☆60Updated 5 months ago
- Quantification of transposable element expression using RNA-seq☆77Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆123Updated last month
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- HiC uniform processing pipeline☆62Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆76Updated 5 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- FEELnc : FlExible Extraction of LncRNA☆92Updated 5 months ago
- ☆49Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 10 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago