bnediction / scBoolSeqLinks
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
☆13Updated 4 months ago
Alternatives and similar repositories for scBoolSeq
Users that are interested in scBoolSeq are comparing it to the libraries listed below
Sorting:
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Updated 2 months ago
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- ☆23Updated 3 weeks ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated 5 months ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆30Updated this week
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆29Updated 5 months ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Finding the causality in biological pathways☆13Updated 2 years ago
- ☆18Updated 2 weeks ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆14Updated 8 years ago
- PROGENY Python implementation☆12Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Python client for the OmniPath web service☆55Updated 6 months ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- ☆41Updated 5 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆27Updated last year
- This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.☆16Updated 3 months ago
- Recurrent Variational Auto gene encoder☆20Updated 2 years ago
- Flow & mass cytometry analytics.☆58Updated last week
- Fit generalized linear models in python.☆28Updated 2 years ago
- factor models for omics data☆30Updated last week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆15Updated 3 weeks ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Python API for Xena Hub☆55Updated 2 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago