bnediction / scBoolSeqLinks
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
☆13Updated 3 months ago
Alternatives and similar repositories for scBoolSeq
Users that are interested in scBoolSeq are comparing it to the libraries listed below
Sorting:
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Updated last month
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated last month
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆29Updated this week
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated 4 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 2 months ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆29Updated 4 months ago
- Methods for inferring undirected networks from data☆46Updated 4 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆24Updated 11 months ago
- Finding the causality in biological pathways☆13Updated 2 years ago
- Recurrent Variational Auto gene encoder☆20Updated 2 years ago
- CZ CELLxGENE Discover Census☆114Updated this week
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Updated 2 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆73Updated 6 months ago
- Unified knowledge-driven network inference from omics data☆88Updated last month
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Updated 4 years ago
- Deep exponential families for single-cell data.☆20Updated 2 months ago
- netZooPy is a network biology package implemented in Python.☆93Updated 5 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆23Updated 8 months ago
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- ☆65Updated last month
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Python client for the OmniPath web service☆55Updated 5 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆14Updated 8 years ago
- Flow & mass cytometry analytics.☆57Updated last week