lulab / exSEEK
exRNA Biomarker Discovery for Liquid Biopsy
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for exSEEK
- R package for CRAG☆11Updated 10 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Third-generation fusion gene detection☆13Updated last year
- RNA editing tests☆16Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- snakemake workflow for post-processing scATACseq data☆19Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- ☆33Updated last year
- ☆23Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆15Updated 10 months ago
- Fork of the Polysolver project☆30Updated 5 years ago
- Long read to rMATS☆31Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 4 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- ☆21Updated 2 weeks ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆30Updated 3 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆18Updated 4 months ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- R package for DNA methylation analysis☆17Updated 3 months ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆24Updated 2 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆29Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- Digenome-toolkit ver2.☆15Updated 3 years ago