zavolanlab / zarpLinks
The Zavolab Automated RNA-seq Pipeline
☆35Updated 5 months ago
Alternatives and similar repositories for zarp
Users that are interested in zarp are comparing it to the libraries listed below
Sorting:
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 7 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 4 months ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 10 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated last week
- gatk4 RNA variant calling pipeline☆58Updated this week
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- visual analysis of your VCF files☆38Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 8 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last month
- TIDDIT - structural variant calling☆78Updated last month
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- for visual evaluation of read support for structural variation☆55Updated last year
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- ☆40Updated 6 months ago
- VEP Plugin to annotate high-impact five prime UTR variants☆28Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Master of Pores 2☆23Updated last year
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Updated 6 months ago