EvolutionaryGenomics / scalability-reproducibility-chapter
Data and workflow examples
☆16Updated 6 years ago
Alternatives and similar repositories for scalability-reproducibility-chapter:
Users that are interested in scalability-reproducibility-chapter are comparing it to the libraries listed below
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 8 months ago
- Luslab nextflow modules☆14Updated 3 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 6 months ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 4 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- ☆14Updated 2 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated last week
- ☆13Updated 7 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 2 years ago
- Introduction to Snakemake for Bioinformatics☆19Updated this week
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 11 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆21Updated 5 years ago
- This BLENDER has been sunsetted☆16Updated 6 months ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 4 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.☆11Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆11Updated last month
- App for hosting gene expression/ontology data with Shiny☆17Updated 7 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆19Updated last year
- Build and maintain multiple custom conda environments all in one place.☆37Updated 3 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago