EvolutionaryGenomics / scalability-reproducibility-chapterLinks
Data and workflow examples
☆16Updated 7 years ago
Alternatives and similar repositories for scalability-reproducibility-chapter
Users that are interested in scalability-reproducibility-chapter are comparing it to the libraries listed below
Sorting:
- Build and maintain multiple custom conda environments all in one place.☆40Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Updated last year
- Application for hosting gene expression and ontology data with Shiny☆17Updated 8 years ago
- Class materials for the NIH HPC snakemake class☆15Updated last year
- DEvis: an R package for aggregation and visualization of differential expression data☆19Updated 5 years ago
- example singularity definition files and demos☆28Updated 7 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Open Targets Genetics UI☆15Updated last year
- Reproducible GSEA Benchmarking☆14Updated 3 months ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- Bioinformatics course (WSBIM1322)☆17Updated 3 weeks ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Updated 4 months ago
- NExt generation Analysis Toolbox☆14Updated 10 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 9 years ago
- UChicago BSD Quantitative Bootcamp 2020☆11Updated 4 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated last month
- Introduction to Snakemake for Bioinformatics☆22Updated last week
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Updated 4 months ago
- A Python library to work with high-throughput sequencing data in the context of data integration☆14Updated 8 years ago
- Luslab nextflow modules☆14Updated 4 years ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆20Updated 2 years ago
- ☆13Updated 8 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 4 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- A statically generated catalog of available Snakemake workflows☆36Updated last week
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Updated 7 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago