stevekm / Bioinformatics
Bioinformatics analysis scripts, workflows, general code examples
☆53Updated 4 years ago
Alternatives and similar repositories for Bioinformatics:
Users that are interested in Bioinformatics are comparing it to the libraries listed below
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Tool for RNA-Seq analysis.☆38Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- ☆48Updated 4 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 4 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- a set of NGS pipelines☆24Updated this week
- An R interface to the MEME Suite☆50Updated 5 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- ☆29Updated 5 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 6 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Detecting intron retention from RNA-Seq experiments☆55Updated 8 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Summer school course materials collection☆25Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 7 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Differential coexpression analysis☆15Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated this week
- Precision HLA typing from next-generation sequencing data☆65Updated last week
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago