stevekm / BioinformaticsLinks
Bioinformatics analysis scripts, workflows, general code examples
☆55Updated 4 years ago
Alternatives and similar repositories for Bioinformatics
Users that are interested in Bioinformatics are comparing it to the libraries listed below
Sorting:
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- ☆29Updated 6 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆50Updated 4 years ago
- R package for genomic feature analysis and visualization☆79Updated 9 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- Website for the precision medicine workshop☆46Updated 2 months ago
- Summer school course materials collection☆27Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 10 months ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- ☆75Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- An R interface to the MEME Suite☆54Updated last month
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Updated 2 years ago
- a set of NGS pipelines☆24Updated last month
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 4 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago