j-andrews7 / awesome-bioinformatics-benchmarksView external linksLinks
A curated and summarized list of bioinformatics bench-marking papers and resources.
☆354Nov 6, 2025Updated 3 months ago
Alternatives and similar repositories for awesome-bioinformatics-benchmarks
Users that are interested in awesome-bioinformatics-benchmarks are comparing it to the libraries listed below
Sorting:
- A list of interesting genome browser and genome visualization programs☆1,047Feb 4, 2026Updated last week
- minimal example implementations for bioinformatics workflow managers☆280Oct 27, 2021Updated 4 years ago
- Bioinformatics one liners from Ming Tang☆501Oct 4, 2020Updated 5 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,648Feb 3, 2026Updated 2 weeks ago
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆142Oct 28, 2025Updated 3 months ago
- List of software packages for multi-omics analysis☆891Jan 28, 2026Updated 2 weeks ago
- A toolkit for single-cell immune profiling☆362Jan 27, 2026Updated 2 weeks ago
- Toolkit for Single-Cell Velocity☆59Jul 8, 2025Updated 7 months ago
- A curated list of awesome Bioinformatics libraries and software.☆3,852Mar 21, 2025Updated 10 months ago
- ChIP-seq analysis notes from Ming Tang☆841Aug 5, 2024Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆12Dec 12, 2024Updated last year
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆387Jun 19, 2025Updated 7 months ago
- Unix, R and python tools for genomics and data science☆1,367Aug 25, 2025Updated 5 months ago
- scRNAseq analysis notes from Ming Tang☆780Dec 2, 2024Updated last year
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆321Mar 6, 2025Updated 11 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 5 months ago
- A tool to find sequencing data and metadata from public databases.☆594Aug 13, 2024Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Nov 17, 2022Updated 3 years ago
- Per-base per-nucleotide depth analysis☆146Feb 4, 2026Updated last week
- Relevant papers for CNV and SV approaches☆94Nov 5, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆396Aug 30, 2025Updated 5 months ago
- ☆13Jan 23, 2020Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Feb 15, 2021Updated 5 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆290Jul 12, 2024Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- A curated list of resources for learning bioinformatics.☆504Feb 23, 2022Updated 3 years ago
- A small database of weird gene annotations☆205Feb 7, 2026Updated last week
- cython + htslib == fast VCF and BCF processing☆427Oct 13, 2025Updated 4 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆356Jun 6, 2025Updated 8 months ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆172Feb 10, 2026Updated last week
- Multi-sample multi-group scRNA-seq analysis tools☆218Dec 18, 2025Updated last month
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- Genomic interval operations on Pandas DataFrames☆188Feb 2, 2026Updated 2 weeks ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Dec 4, 2024Updated last year
- Detecting sites of genomic enrichment☆198May 8, 2023Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆303Nov 14, 2025Updated 3 months ago
- Inferring CNV from Single-Cell RNA-Seq☆650Nov 14, 2025Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,419Jan 15, 2026Updated last month