A curated and summarized list of bioinformatics bench-marking papers and resources.
☆364Feb 26, 2026Updated 5 months ago
Alternatives and similar repositories for awesome-bioinformatics-benchmarks
Users that are interested in awesome-bioinformatics-benchmarks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆144Oct 28, 2025Updated 9 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,815Jul 14, 2026Updated 2 weeks ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 3 months ago
- Bioinformatics one liners from Ming Tang☆501Oct 4, 2020Updated 5 years ago
- A curated list of awesome Bioinformatics libraries and software.☆4,198Apr 7, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- minimal example implementations for bioinformatics workflow managers☆290Oct 27, 2021Updated 4 years ago
- A toolkit for single-cell immune profiling☆373Jul 9, 2026Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,098Jul 21, 2026Updated last week
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated last year
- List of software packages for multi-omics analysis☆938Jul 16, 2026Updated last week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- scRNAseq analysis notes from Ming Tang☆826Dec 2, 2024Updated last year
- Unix, R and python tools for genomics and data science☆1,403Aug 25, 2025Updated 11 months ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆337May 18, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Relevant papers for CNV and SV approaches☆94Nov 5, 2024Updated last year
- Moderator Templates for https://www.biostars.org/☆11Apr 15, 2021Updated 5 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆392Apr 4, 2026Updated 3 months ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 3 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Feb 15, 2021Updated 5 years ago
- A curated list of resources for learning bioinformatics.☆520Jul 9, 2026Updated 2 weeks ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- A tool to find sequencing data and metadata from public databases.☆602Aug 13, 2024Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bioinformatics and genomics resources☆90Jan 5, 2026Updated 6 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆297Jul 12, 2024Updated 2 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Inferring CNV from Single-Cell RNA-Seq☆678Nov 14, 2025Updated 8 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆237Jul 6, 2026Updated 3 weeks ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- ☆18Oct 17, 2023Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Apr 16, 2025Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆56Dec 13, 2020Updated 5 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Fast Wilcoxon and auROC☆214May 5, 2026Updated 2 months ago
- Per-base per-nucleotide depth analysis☆150May 9, 2026Updated 2 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,480Updated this week
- 🧬 gget enables efficient querying of genomic reference databases☆1,180Updated this week