j-andrews7 / awesome-bioinformatics-benchmarksLinks
A curated and summarized list of bioinformatics bench-marking papers and resources.
☆345Updated 9 months ago
Alternatives and similar repositories for awesome-bioinformatics-benchmarks
Users that are interested in awesome-bioinformatics-benchmarks are comparing it to the libraries listed below
Sorting:
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- ☆207Updated last month
- Intro to ChIPseq using HPC☆313Updated 2 years ago
- ☆400Updated 3 years ago
- RNA-seq workflow using STAR and DESeq2☆346Updated last month
- Bioinformatics one liners from Ming Tang☆495Updated 5 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated this week
- ENCODE ChIP-seq pipeline☆273Updated last year
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆171Updated 4 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆297Updated 2 months ago
- GTEx & TOPMed data production and analysis pipelines☆384Updated 3 weeks ago
- Application for making ENCODE Blacklists☆321Updated 4 years ago
- A tool to find sequencing data and metadata from public databases.☆585Updated last year
- 10x Genomics Single Cell Analysis☆432Updated 7 months ago
- Workshops presented by the Gladstone Bioinformatics Core☆237Updated last week
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last week
- Collections of library structure and sequence of popular single cell genomic methods☆479Updated 4 months ago
- Introduction to bulk RNA-seq☆122Updated 5 months ago
- Materials for short, half-day workshops☆338Updated 3 weeks ago
- T/B cell receptor sequencing analysis notes☆265Updated 10 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆225Updated 3 weeks ago
- Short lessons from FAS Informatics coffee hour☆152Updated 2 years ago
- Step-by-step analysis pipeline for RNA-seq data☆142Updated 2 years ago
- A collection of resources for learning about tools and programming languages related to Bioinformatics☆182Updated 3 years ago
- ENCODE ATAC-seq pipeline☆433Updated last year
- parallel fastq-dump wrapper☆298Updated 2 years ago
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆190Updated 4 years ago
- Analysis of single cell RNA-seq data course☆151Updated 3 years ago
- ☆441Updated 5 years ago