Alternatives and similar repositories for awesome-bioinformatics-benchmarks:

Users that are interested in awesome-bioinformatics-benchmarks are comparing it to the libraries listed below

• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆339Updated 7 months ago
• hbctraining / Intro-to-DGE
  ☆192Updated this week
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆300Updated 2 years ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆453Updated 3 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆394Updated this week
• hbctraining / DGE_workshop
  ☆386Updated 3 years ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆270Updated 5 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆568Updated 7 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆278Updated 8 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆295Updated 3 years ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆207Updated last month
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆390Updated last month
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆316Updated this week
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆325Updated last month
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆149Updated last year
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆166Updated 4 years ago
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆393Updated this week
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆288Updated last year
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆328Updated this week
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆245Updated 3 months ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆481Updated 4 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆407Updated 8 months ago
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆303Updated 8 months ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆244Updated last month
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆481Updated 2 months ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆358Updated last month
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆421Updated this week
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆264Updated last year
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆797Updated 8 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆262Updated last year