Alternatives and similar repositories for awesome-bioinformatics-benchmarks

Users that are interested in awesome-bioinformatics-benchmarks are comparing it to the libraries listed below

• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated last week
• hbctraining / Intro-to-DGE
  ☆207Updated last month
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆313Updated 2 years ago
• hbctraining / DGE_workshop
  ☆400Updated 3 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆346Updated last month
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆495Updated 5 years ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆331Updated this week
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆273Updated last year
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆171Updated 4 years ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆286Updated last year
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆297Updated 2 months ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆384Updated 3 weeks ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆321Updated 4 years ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆585Updated last year
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆432Updated 7 months ago
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆237Updated last week
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆219Updated last week
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆479Updated 4 months ago
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆122Updated 5 months ago
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆338Updated 3 weeks ago
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆265Updated 10 months ago
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆225Updated 3 weeks ago
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆152Updated 2 years ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆142Updated 2 years ago
• BioinformaNicks / Bioinformatics-training-collection
  A collection of resources for learning about tools and programming languages related to Bioinformatics
  ☆182Updated 3 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆433Updated last year
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆298Updated 2 years ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆190Updated 4 years ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆151Updated 3 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆441Updated 5 years ago