Analyses in R and Python Using curatedMetagenomicData
☆38Nov 16, 2025Updated 6 months ago
Alternatives and similar repositories for curatedMetagenomicDataAnalyses
Users that are interested in curatedMetagenomicDataAnalyses are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆17Mar 5, 2026Updated 3 months ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Curated Metagenomic Data of the Human Microbiome☆156May 14, 2026Updated last month
- Microbiome-based disease prediction with multimodal variational information bottlenecks, Grazioli et al., PLOS Computational Biology 2022☆25Apr 12, 2022Updated 4 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆25May 26, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆40Sep 28, 2022Updated 3 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 8 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 4 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆177Updated this week
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Deep representation learning for disease prediction based on microbiome data☆63Apr 21, 2023Updated 3 years ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- ☆79Oct 16, 2024Updated last year
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- TensorFlow-Implementation of Deep Archetypal Analysis☆12Aug 4, 2021Updated 4 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆34Jan 27, 2026Updated 4 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- ☆34Sep 5, 2024Updated last year
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- ☆18Nov 19, 2024Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆215Jun 8, 2026Updated last week
- ☆24Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- ☆17Feb 3, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆26Aug 10, 2023Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆34Aug 23, 2022Updated 3 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆106Sep 17, 2022Updated 3 years ago
- Metagenomic sequence data analysis pipeline☆36Sep 5, 2025Updated 9 months ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆41Sep 17, 2025Updated 8 months ago
- Papers of deep learning for trading☆13Jun 4, 2020Updated 6 years ago