waldronlab / curatedMetagenomicDataAnalysesLinks
Analyses in R and Python Using curatedMetagenomicData
☆33Updated last month
Alternatives and similar repositories for curatedMetagenomicDataAnalyses
Users that are interested in curatedMetagenomicDataAnalyses are comparing it to the libraries listed below
Sorting:
- gutSMASH☆55Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆50Updated last month
- Bioinformatics Tools☆90Updated last month
- ☆32Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆59Updated last year
- ☆58Updated last year
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Course material for the metagenomics course☆47Updated 3 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆36Updated 8 months ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- ☆61Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- Woltka: a versatile meta'omic data classifier☆75Updated 3 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆94Updated last year
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆96Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆83Updated last year
- ☆81Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 3 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year