Analyses in R and Python Using curatedMetagenomicData
☆39Nov 16, 2025Updated 10 months ago
Alternatives and similar repositories for curatedMetagenomicDataAnalyses
Users that are interested in curatedMetagenomicDataAnalyses are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Curated Metagenomic Data of the Human Microbiome☆161Oct 6, 2026Updated last week
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆18Jun 30, 2026Updated 3 months ago
- Microbiome-based disease prediction with multimodal variational information bottlenecks, Grazioli et al., PLOS Computational Biology 2022☆25Apr 12, 2022Updated 4 years ago
- Public repository for cFMD - curatedFoodMetagenomicData☆39Jun 18, 2026Updated 3 months ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆17Apr 9, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- strain-level analysis tools☆40Oct 21, 2024Updated last year
- ☆27Oct 5, 2026Updated last week
- ☆18Nov 19, 2022Updated 3 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆28Aug 14, 2026Updated last month
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆43Updated this week
- ☆10Mar 24, 2025Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 8 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- ☆11May 31, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Mar 10, 2024Updated 2 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 4 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 3 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Aug 20, 2026Updated last month
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆186Jul 17, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Deep representation learning for disease prediction based on microbiome data☆66Apr 21, 2023Updated 3 years ago
- ☆86Oct 16, 2024Updated last year
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- TensorFlow-Implementation of Deep Archetypal Analysis☆12Aug 4, 2021Updated 5 years ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated last month
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- A manually curated database of human gut metabolic modules.☆19Jul 27, 2018Updated 8 years ago
- Template for building a bioconductor workshop package using github actions☆23Aug 5, 2026Updated 2 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆228Sep 22, 2026Updated 3 weeks ago
- ☆32Jun 12, 2023Updated 3 years ago
- ☆18Dec 5, 2017Updated 8 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆32Jan 5, 2025Updated last year
- ☆42Jul 31, 2017Updated 9 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago