waldronlab / curatedMetagenomicDataAnalyses
Analyses in R and Python Using curatedMetagenomicData
☆29Updated 2 months ago
Alternatives and similar repositories for curatedMetagenomicDataAnalyses:
Users that are interested in curatedMetagenomicDataAnalyses are comparing it to the libraries listed below
- gutSMASH☆53Updated 3 months ago
- ☆32Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆33Updated this week
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- ☆41Updated 4 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 4 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆39Updated last month
- ☆67Updated 2 weeks ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- ☆35Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- A microbiome analysis toolkit for R☆22Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 2 months ago
- Course material for the metagenomics course☆43Updated 3 years ago
- ☆28Updated 2 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 5 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 7 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆11Updated 7 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago