waldronlab / curatedMetagenomicDataAnalysesLinks
Analyses in R and Python Using curatedMetagenomicData
☆32Updated 2 weeks ago
Alternatives and similar repositories for curatedMetagenomicDataAnalyses
Users that are interested in curatedMetagenomicDataAnalyses are comparing it to the libraries listed below
Sorting:
- gutSMASH☆55Updated 3 weeks ago
- Bioinformatics Tools☆89Updated 3 weeks ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated 2 weeks ago
- Pipelines used in the lab.☆14Updated 7 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- ☆32Updated 2 years ago
- Course material for the metagenomics course☆46Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Updated 3 weeks ago
- ☆57Updated last year
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated last year
- (Meta-)genome screening for functional and natural product gene sequences☆92Updated this week
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated 11 months ago
- ☆79Updated this week
- Vanilla regression methods for microbiome differential abundance analysis☆59Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago