Alternatives and similar repositories for ecmtool

Users that are interested in ecmtool are comparing it to the libraries listed below

• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆23Updated 3 months ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆29Updated 6 years ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆64Updated 5 months ago
• AuReMe / metage2metabo
  From annotated genomes to metabolic screening in large scale microbiotas
  ☆64Updated 4 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆111Updated this week
• kelwyres / Bactabolize
  ☆41Updated 4 months ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆86Updated last month
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆63Updated 8 months ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆186Updated 3 weeks ago
• jlw-ecoevo / gRodon2
  ☆47Updated 3 weeks ago
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆14Updated last year
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆119Updated last week
• dimiboeckaerts / PhageRBPdetection
  Detection of phage RBPs based on protein domains and machine learning
  ☆25Updated 8 months ago
• motu-tool / FetchMGs
  ☆12Updated 3 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆57Updated 6 months ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆14Updated 6 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆72Updated 5 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆64Updated this week
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆128Updated 3 weeks ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆75Updated 2 years ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆20Updated last year
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆130Updated last week
• qLSLab / GPRuler
  GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…
  ☆11Updated 2 years ago
• althonos / pyrodigal
  Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
  ☆171Updated last month
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆23Updated 2 years ago
• KennthShang / PhaTYP
  PhaTYP: Predicting lifestyle for bacteriophages using BERT
  ☆13Updated 11 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆97Updated 2 years ago
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆78Updated 10 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆38Updated last year
• Tomikent / Capsid_community
  ☆13Updated last month