Uncover organisms' metabolic blueprints
☆18Jun 18, 2024Updated 2 years ago
Alternatives and similar repositories for ecmtool
Users that are interested in ecmtool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated 3 months ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 6 months ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆19Sep 26, 2025Updated 11 months ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Aug 23, 2026Updated last week
- The standard for open-source GEMs on GitHub☆22Aug 17, 2026Updated last week
- R package to Import and Modify SVG (XML) Graphic Files☆28Nov 1, 2024Updated last year
- ☆20Aug 29, 2025Updated last year
- SMETANA: a tool to analyse interactions in microbial communities☆74May 6, 2025Updated last year
- ☆18Jun 5, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 5 months ago
- ☆51Jun 11, 2025Updated last year
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Aug 15, 2026Updated 2 weeks ago
- Python package for analyzing and visualizing iModulons☆16Aug 17, 2026Updated last week
- A python library for metabolic networks sampling and analysis☆70May 22, 2026Updated 3 months ago
- A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism☆15Feb 12, 2025Updated last year
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated 3 months ago
- ☆56Mar 29, 2026Updated 5 months ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆151Aug 14, 2025Updated last year
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- ☆23Aug 18, 2026Updated last week
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated last month
- The sources of the web LFortran GUI interface☆15May 6, 2026Updated 3 months ago
- A two-phase (water + gas) reactive transport model, written in Julia, that also simulates geochemical reactions between water-gas-mineral…☆13May 8, 2017Updated 9 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆33Mar 5, 2019Updated 7 years ago
- Python package for creating, calibrating and simulating RBA models☆14Aug 19, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 2 years ago
- An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.☆16Oct 19, 2022Updated 3 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆13Aug 19, 2021Updated 5 years ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- Constraint-based Metabolic Modeling Course☆11Jul 25, 2022Updated 4 years ago
- プログラミング演習1/実践データサイエンス☆11Jul 9, 2026Updated last month