Uncover organisms' metabolic blueprints
☆18Jun 18, 2024Updated 2 years ago
Alternatives and similar repositories for ecmtool
Users that are interested in ecmtool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆20May 11, 2026Updated 5 months ago
- The standard for open-source GEMs on GitHub☆22Oct 5, 2026Updated 3 weeks ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 8 months ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 8 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 3 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- ☆19May 8, 2024Updated 2 years ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆20Sep 26, 2025Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 4 years ago
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- Metabolic Engineering Workbench☆43Jun 9, 2024Updated 2 years ago
- Collection of genome-scale metabolic models, genomes, and scripts for At-LSPHERE bacterial culture collection☆10Jul 25, 2023Updated 3 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Oct 7, 2026Updated 3 weeks ago
- GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)☆14Jun 29, 2026Updated 4 months ago
- ☆21Aug 29, 2025Updated last year
- Toolbox for including enzyme constraints on a genome-scale model. This repository holds GECKO 3.x; GECKO 4 is developed in CompMetEng/GEC…☆95Oct 16, 2026Updated last week
- The official PySCeS project source code repository.☆40Oct 14, 2026Updated 2 weeks ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models …☆10Oct 11, 2022Updated 4 years ago
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- R package to Import and Modify SVG (XML) Graphic Files☆29Nov 1, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆71Updated this week
- FluxGAT introduces a graph neural network (GNN) model designed to predict gene essentiality by utilising graphical representations derive…☆11Mar 5, 2026Updated 7 months ago
- ☆18Jun 5, 2026Updated 4 months ago
- Python package to study microbial communities using metabolic modeling.☆140Updated this week
- Python package for creating, calibrating and simulating RBA models☆14Aug 19, 2026Updated 2 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆79May 6, 2025Updated last year
- Differentiable constraint-based metabolic models☆14Oct 15, 2026Updated 2 weeks ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆27Jul 15, 2024Updated 2 years ago
- ☆11Dec 15, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A compact metabolic model of Escherichia Coli core and biosynthetic metabolism☆14Mar 17, 2026Updated 7 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- ☆52Jun 11, 2025Updated last year
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 4 months ago
- A python library for metabolic networks sampling and analysis☆69May 22, 2026Updated 5 months ago
- WDL Workflow for metagenome assembly☆11Aug 15, 2023Updated 3 years ago
- Python package for analyzing and visualizing iModulons☆16Oct 19, 2026Updated last week