Uncover organisms' metabolic blueprints
☆13Jun 18, 2024Updated last year
Alternatives and similar repositories for ecmtool
Users that are interested in ecmtool are comparing it to the libraries listed below
Sorting:
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- Enzyme-constrained genome-scale models in python☆36Oct 25, 2023Updated 2 years ago
- The standard for open-source GEMs on GitHub☆21Oct 26, 2023Updated 2 years ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆18Sep 26, 2025Updated 5 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 10 months ago
- ☆17May 13, 2025Updated 10 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆16Mar 12, 2026Updated last week
- ☆50Jan 4, 2026Updated 2 months ago
- The sources of the web LFortran GUI interface☆14Feb 21, 2026Updated 3 weeks ago
- Drop-in replacement for ImageSurface supporting AspectFit & AspectFill☆18Nov 16, 2018Updated 7 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆28Sep 3, 2024Updated last year
- Lightweight Fortran 90 Parareal for 3D Burgers' equation☆13Mar 8, 2024Updated 2 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Mar 5, 2019Updated 7 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆69Jan 16, 2026Updated 2 months ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- Python package for analyzing and visualizing iModulons☆14Mar 9, 2026Updated last week
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆12Dec 16, 2025Updated 3 months ago
- A lightweight implementation of the PFASST algorithm☆13Mar 3, 2026Updated 2 weeks ago
- This Julia language (version 0.5) script solves the coupled partial differential equations associated with (1) compressible gas flow in p…☆11May 8, 2017Updated 8 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 5 months ago
- A two-phase (water + gas) reactive transport model, written in Julia, that also simulates geochemical reactions between water-gas-mineral…☆12May 8, 2017Updated 8 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- An almost pure Julia version of OptimPack for numerical optimization with particular focus on large scale problems☆12Feb 24, 2026Updated 3 weeks ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- ☆18Dec 11, 2024Updated last year
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated 10 months ago
- MGnify RESTful API☆10Feb 11, 2026Updated last month
- ☆10Dec 15, 2023Updated 2 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- notebooks and files for the Bayesian CBIOMES workshop☆11Jan 31, 2020Updated 6 years ago
- ☆44Jun 11, 2025Updated 9 months ago
- ☆19Oct 9, 2017Updated 8 years ago
- QEMU for Sony BIONZ image processors☆17Jun 19, 2021Updated 4 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago