Alternatives and similar repositories for ecmtool:

Users that are interested in ecmtool are comparing it to the libraries listed below

• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆19Updated last week
• rcolpo / pgp_reconstruction
  Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
  ☆12Updated last year
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 6 years ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆22Updated 3 weeks ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆60Updated last month
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆14Updated last year
• kelwyres / Bactabolize
  ☆38Updated 3 months ago
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆13Updated last year
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆58Updated 4 years ago
• qLSLab / GPRuler
  GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…
  ☆11Updated 2 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆78Updated 4 months ago
• segrelab / cometspy
  Python interface for running COMETS simulations and analyzing the results
  ☆12Updated last month
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 10 months ago
• jlw-ecoevo / gRodon2
  ☆40Updated 8 months ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆12Updated last week
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated last week
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆97Updated this week
• AuReMe / metage2metabo
  From annotated genomes to metabolic screening in large scale microbiotas
  ☆56Updated 3 weeks ago
• cdanielmachado / cooccurrence
  Supplementary data for co-occurrence manuscript
  ☆10Updated 5 years ago
• chevrettelab / gator-gc
  ☆12Updated last week
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆39Updated 3 months ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 7 months ago
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆17Updated 2 years ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆91Updated last month
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 years ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆22Updated 3 weeks ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆26Updated last year
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆35Updated last year
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆164Updated 6 months ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆35Updated last year