Gibbons-Lab / isb_course_2020Links
Materials and tutorials for the 2020 ISB Microbiome Course
☆30Updated 2 years ago
Alternatives and similar repositories for isb_course_2020
Users that are interested in isb_course_2020 are comparing it to the libraries listed below
Sorting:
- gutSMASH☆54Updated 6 months ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated 2 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 9 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- ☆17Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Updated 9 months ago
- ☆55Updated last month
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆48Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Updated 7 years ago
- An R package designed for drawing gene arrow maps☆79Updated last week
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- A Python package for microbiome sequencing analysis with QIIME 2☆45Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆52Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 9 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆29Updated 8 months ago
- CLI tool to annotate genes with KOfam☆80Updated 2 years ago