Materials and tutorials for the 2020 ISB Microbiome Course
☆31Nov 10, 2022Updated 3 years ago
Alternatives and similar repositories for isb_course_2020
Users that are interested in isb_course_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome Analysis Plotting and Visualization☆12Jun 1, 2026Updated 2 weeks ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated last week
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆28Mar 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- microbiome data simulation package☆22Oct 2, 2025Updated 8 months ago
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 4 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 4 months ago
- REference Sequence annotation and CuRatIon Pipeline☆100Jun 3, 2026Updated last week
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 3 years ago
- Flexible and accessible Python framework for cardiac electrophysiology simulations using finite-difference methods.☆13Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 5 months ago
- Materials and presentation for the 2022 ISB Microbiome course.☆27Jun 13, 2024Updated 2 years ago
- ☆15Mar 31, 2022Updated 4 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 6 years ago
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆18Jun 4, 2026Updated last week
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12May 11, 2026Updated last month
- ☆25Jul 29, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A repo with just adapter sequences☆15Jul 7, 2025Updated 11 months ago
- CCLasso: Correlation Inference for Compositional Data through Lasso☆17Jan 8, 2016Updated 10 years ago
- These are my contributions to the weekly #TidyTuesday challenges!☆11May 30, 2021Updated 5 years ago
- A mini course on biological data analysis☆10Jan 16, 2025Updated last year
- ☆28Apr 7, 2026Updated 2 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆74May 26, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code used in MiCE 8992 Spring 2016☆44Apr 19, 2016Updated 10 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Mar 27, 2026Updated 2 months ago
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- The Cardiovascular Integrated Modelling and Simulation Environment's Open-Source Incompressibe Navier Stokes Finite Element Flowsolver☆14Jan 23, 2022Updated 4 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago