Materials and tutorials for the 2020 ISB Microbiome Course
☆31Nov 10, 2022Updated 3 years ago
Alternatives and similar repositories for isb_course_2020
Users that are interested in isb_course_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome Analysis Plotting and Visualization☆13Updated this week
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆29Mar 8, 2023Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Aug 20, 2026Updated last month
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Workshop • Intro to Bioinformatics using NGS data • 5 days☆17Updated this week
- microbiome data simulation package☆22Oct 2, 2025Updated 11 months ago
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 7 months ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆154Feb 5, 2026Updated 7 months ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆129May 12, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- REference Sequence annotation and CuRatIon Pipeline☆102Updated this week
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 4 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12Jul 22, 2026Updated 2 months ago
- Materials and presentation for the 2022 ISB Microbiome course.☆27Jun 13, 2024Updated 2 years ago
- Flexible and accessible Python framework for cardiac electrophysiology simulations using finite-difference methods.☆13Updated this week
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 8 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 7 years ago
- ☆14May 31, 2025Updated last year
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15Mar 31, 2022Updated 4 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 4 months ago
- ☆29Updated this week
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- These are my contributions to the weekly #TidyTuesday challenges!☆11May 30, 2021Updated 5 years ago
- Converter functions for the MSstats package☆12Sep 12, 2026Updated last week
- A mini course on biological data analysis☆10Jan 16, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated last month
- The full package for the "multi-scale cardiac simulation framework" in C/C++☆12Feb 1, 2024Updated 2 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Sep 13, 2026Updated last week
- GitHub for the SIB courses NGS - Genome variant analysis☆28Updated this week
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- Master thesis work: explaining deep reinforcement learning policies☆10Aug 27, 2020Updated 6 years ago