Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University
☆42Jan 22, 2026Updated 2 months ago
Alternatives and similar repositories for EdwardsLab
Users that are interested in EdwardsLab are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 6 years ago
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 11 months ago
- Match up paired end fastq files quickly and efficiently.☆156Jun 2, 2024Updated last year
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated 9 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 3 weeks ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- Draw Circos in Python☆31Sep 19, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆46Jun 27, 2023Updated 2 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Feb 26, 2026Updated last month
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆66May 5, 2023Updated 2 years ago
- edit distance sequence tags and helpers☆12Feb 4, 2021Updated 5 years ago
- Robs manual for the computational genomics and bioinformatics class.☆268Nov 12, 2024Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 4 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆18Jan 7, 2026Updated 3 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🍶 Genome assembly with short sequence reads☆25Mar 10, 2026Updated last month
- Scripts and advice to run IMPUTE2 on 23 and me raw data☆22Mar 18, 2014Updated 12 years ago
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- Sequencing and analysis of crAssphage regions from around the globe☆18Apr 7, 2020Updated 6 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 10 months ago
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- ☆19Nov 16, 2018Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Nov 24, 2025Updated 4 months ago
- ☆12Dec 12, 2014Updated 11 years ago
- A Pelican plugin to generate PDF resumes automatically from a Pelican page in Markdown☆11Feb 8, 2016Updated 10 years ago
- Library for analyzing and manipulating phylogenetic trees☆15Apr 4, 2026Updated 2 weeks ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Renames headers in FASTA file☆13Jun 28, 2017Updated 8 years ago