linsalrob / EdwardsLab
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University
☆40Updated 3 weeks ago
Alternatives and similar repositories for EdwardsLab:
Users that are interested in EdwardsLab are comparing it to the libraries listed below
- ☆41Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆40Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A package to annotate protein sequences☆56Updated 2 months ago
- ☆23Updated 6 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 7 months ago
- StrainFinder☆26Updated 6 years ago
- ☆32Updated last year
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆69Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 4 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- CLI tool to annotate genes with KOfam☆79Updated last year
- gutSMASH☆53Updated 4 months ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆64Updated last year
- Estimate metagenomic coverage and sequence diversity☆51Updated 8 months ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆43Updated 9 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- MEGAN Community Edition☆70Updated 9 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- YAMP: Yet Another Metagenomic Pipeline☆59Updated last year
- Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.☆22Updated 8 years ago