linsalrob / ComputationalGenomicsManualLinks
Robs manual for the computational genomics and bioinformatics class.
☆256Updated 8 months ago
Alternatives and similar repositories for ComputationalGenomicsManual
Users that are interested in ComputationalGenomicsManual are comparing it to the libraries listed below
Sorting:
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆244Updated last year
- Bioinformatics Workbook repository☆189Updated last week
- This repo collects the list of learning online resources related to microbiome computational science and tools.☆95Updated 8 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆394Updated 3 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆208Updated 11 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆184Updated 2 weeks ago
- bioBakery tools for meta'omic profiling☆285Updated 2 months ago
- ☆259Updated last week
- A genome visualization python package for comparative genomics☆349Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆345Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆466Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆379Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆347Updated last week
- Genome-scale protein function classification☆338Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline☆359Updated last month
- A complete pipeline for metagenomic analysis☆422Updated 3 weeks ago
- Gene cluster comparison figure generator☆601Updated 8 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆358Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆317Updated 4 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆271Updated 3 weeks ago
- Download FASTQ files from SRA or ENA repositories.☆339Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆430Updated 3 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆426Updated 7 months ago
- Align proteins to genomes with splicing and frameshift☆378Updated 3 weeks ago
- Genome annotation with AUGUSTUS☆313Updated last month
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆183Updated 4 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆289Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆540Updated last month
- A curated list of awesome nanopore analysis tools.☆286Updated last month