Teichlab / HCA_Heart_ver2

Related projects ⓘ

Alternatives and complementary repositories for HCA_Heart_ver2

• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆38Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆44Updated 3 weeks ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated 9 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆24Updated 3 weeks ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆18Updated 3 months ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆34Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆32Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆34Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆13Updated last year
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆50Updated last month
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆16Updated 8 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆18Updated 6 months ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆21Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆46Updated this week
• Winnie09 / Lamian
  ☆44Updated 3 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆24Updated 2 weeks ago
• immunogenomics / sceQTL
  Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
  ☆14Updated last year
• bio-Pixel / panVC
  ☆28Updated 8 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆37Updated last year
• Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlas
  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
  ☆24Updated 3 weeks ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆25Updated 3 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆25Updated 4 months ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆37Updated 3 years ago
• PaulingLiu / metaICB
  ☆22Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆27Updated last year
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆18Updated 2 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆20Updated this week