detecting spatial patterns of allele-specific expression
☆11May 22, 2024Updated last year
Alternatives and similar repositories for spASE
Users that are interested in spASE are comparing it to the libraries listed below
Sorting:
- ☆13Jul 11, 2023Updated 2 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Aug 11, 2020Updated 5 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Apr 1, 2024Updated last year
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆29Nov 21, 2025Updated 3 months ago
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- ☆114Sep 16, 2020Updated 5 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆28Sep 15, 2023Updated 2 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Jan 9, 2026Updated last month
- Count HLA alleles in single-cell RNA-seq data☆63Nov 5, 2021Updated 4 years ago
- These are scripts for pan-cacner NK cells analyses.☆76Aug 18, 2023Updated 2 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31May 20, 2025Updated 9 months ago
- LLMRouterBench: A Massive Benchmark and Unified Framework for LLM Routing☆38Jan 30, 2026Updated last month
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- ☆12Mar 28, 2025Updated 11 months ago
- ☆36Sep 25, 2022Updated 3 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Dec 30, 2024Updated last year
- XSStrike-go☆46Updated this week
- ☆13Feb 12, 2026Updated 2 weeks ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Code for RNA-seq gene coexpression analysis☆10Dec 23, 2021Updated 4 years ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆11Nov 8, 2025Updated 3 months ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 2 months ago
- Automated liver NAFLD/NASH scoring☆13Aug 2, 2024Updated last year
- ☆11May 12, 2021Updated 4 years ago
- Single-cell Case Control Analysis☆53Updated this week
- mouse pet-ct image segmentation☆12Feb 19, 2023Updated 3 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- ☆14Mar 28, 2025Updated 11 months ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- ☆17Oct 2, 2024Updated last year
- My English blog built with Hugo☆11Feb 14, 2026Updated 2 weeks ago
- R code for metaanalysis of single cell liver data☆12Feb 1, 2021Updated 5 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- ☆10Apr 28, 2023Updated 2 years ago
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 4 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago