gevaertlab / sequoia-pubLinks
SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
☆42Updated 2 months ago
Alternatives and similar repositories for sequoia-pub
Users that are interested in sequoia-pub are comparing it to the libraries listed below
Sorting:
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆30Updated 4 months ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆52Updated last month
- ☆34Updated last month
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- ☆55Updated 2 years ago
- ☆22Updated 2 years ago
- ☆140Updated 8 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆58Updated last year
- Accessible and interoperable whole slide image analysis☆129Updated 2 weeks ago
- ☆56Updated last year
- Reproducing the experiments of the DestVI paper☆19Updated 3 years ago
- Multimodality Fusion Subtyping (Nature Communications)☆25Updated 4 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆55Updated 2 years ago
- ☆45Updated 3 years ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- ☆11Updated 6 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 5 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 4 months ago
- Her2 Breast Cancer Project☆84Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 2 months ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆10Updated 3 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆53Updated this week
- domain adaptation of spatial and single-cell transcriptome☆27Updated 11 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆58Updated last year
- ☆27Updated 7 months ago
- ☆38Updated last year
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆81Updated 10 months ago