gevaertlab / sequoia-pubLinks
SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
☆46Updated 7 months ago
Alternatives and similar repositories for sequoia-pub
Users that are interested in sequoia-pub are comparing it to the libraries listed below
Sorting:
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆33Updated 9 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 6 years ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆63Updated 3 weeks ago
- ☆35Updated this week
- ☆56Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- ☆22Updated 3 years ago
- Accessible and interoperable whole slide image analysis☆174Updated this week
- ☆18Updated 11 months ago
- Multimodality Fusion Subtyping (Nature Communications)☆30Updated 8 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Updated 10 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated last week
- ☆19Updated 9 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37Updated 3 years ago
- ☆40Updated last week
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- ☆158Updated last year
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆43Updated 2 months ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆12Updated 8 months ago
- ☆60Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 5 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23Updated 8 months ago
- ☆53Updated 3 years ago
- ☆35Updated 4 years ago
- ☆20Updated last month
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 5 years ago
- ☆32Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆112Updated this week