dnanexus-archive / parliament2Links
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
☆103Updated 5 years ago
Alternatives and similar repositories for parliament2
Users that are interested in parliament2 are comparing it to the libraries listed below
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆151Updated last week
- SV caller for nanopore data☆92Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Structural Variant Index☆75Updated 11 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 5 months ago
- ☆123Updated 4 months ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 months ago
- A tool for profiling long STRs from short reads☆103Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Toolkit for calling structural variants using short or long reads☆113Updated 2 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 5 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Data and information about the Polaris study☆54Updated 6 years ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year