slzarate / parliament2Links
Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
☆22Updated 4 years ago
Alternatives and similar repositories for parliament2
Users that are interested in parliament2 are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Tools for merging Tandem Repeat VCF files☆36Updated 6 months ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- ☆24Updated 5 months ago
- ☆29Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Easy genomic regions for short-read variant calling☆45Updated 2 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 11 months ago
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago