marbl / MUMmer3
MUMmer3
☆15Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for MUMmer3
- MetaCarvel: A scaffolder for metagenomes☆13Updated 2 months ago
- ☆28Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- ☆15Updated 4 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated last week
- ☆29Updated last year
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- A comparative genome scaffolding tool☆17Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Scaffolding with Ultralong Reads☆14Updated 4 years ago
- ☆15Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Indel-aware consensus from aligned BAMs☆20Updated last year
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Find Unique genomic Regions☆29Updated this week
- recompute GFA link overlaps☆25Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 6 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- ☆13Updated last year
- transposable element typing pipeline☆16Updated 8 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 5 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 7 months ago
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆14Updated this week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year