marbl / MUMmer3Links
MUMmer3
☆17Updated 3 years ago
Alternatives and similar repositories for MUMmer3
Users that are interested in MUMmer3 are comparing it to the libraries listed below
Sorting:
- MetaCarvel: A scaffolder for metagenomes☆14Updated 8 months ago
- ☆28Updated last month
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- ☆31Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- mGEMS Genomic epidemiology with mixed samples☆16Updated 9 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- ☆16Updated 4 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ☆15Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆40Updated 7 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- genomic alignment similarity search tool☆18Updated 3 weeks ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 7 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month