ShiLab-Bioinformatics / subreadLinks
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.
☆45Updated last year
Alternatives and similar repositories for subread
Users that are interested in subread are comparing it to the libraries listed below
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- ☆58Updated 3 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 3 weeks ago
- ☆49Updated 4 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆85Updated 5 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 8 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆111Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 11 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- An R interface to the MEME Suite☆50Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated last month
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- Software for Quantifying Interspersed Repeat Expression☆59Updated 3 years ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last month
- Demultiplexes a fastq.☆44Updated 4 years ago
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated 3 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆27Updated 4 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆85Updated 8 months ago