ShiLab-Bioinformatics / subread
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.
☆29Updated last year
Related projects: ⓘ
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- ☆47Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆77Updated 2 months ago
- ☆49Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆43Updated 8 months ago
- SingleCell Nanopore sequencing data analysis☆47Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆45Updated 5 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆64Updated 2 weeks ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆38Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆71Updated 10 months ago
- Pair-End AssembeR☆25Updated 10 years ago
- Detecting intron retention from RNA-Seq experiments☆52Updated 2 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- Demultiplexes a fastq.☆42Updated 3 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 11 years ago
- A list of alternative splicing analysis resources☆33Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆69Updated 3 weeks ago
- Scripts to import your FeatureCounts output into DEXSeq☆29Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆34Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- Allele-specific alignment sorting☆52Updated last year
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆26Updated this week
- Ultraperformant reimplementation of SICER☆55Updated 3 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆67Updated 2 years ago
- ☆25Updated this week
- ☆38Updated this week
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Single cell Nanopore sequencing data for Genotype and Phenotype☆38Updated 2 weeks ago
- Tutorial Website☆51Updated 3 years ago