Alternatives and similar repositories for mptp:

Users that are interested in mptp are comparing it to the libraries listed below

• rbouckaert / starbeast3
  ☆17Updated 6 months ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆47Updated 7 months ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 3 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated 5 months ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• blackrim / phyutility
  ☆22Updated 10 years ago
• gtonkinhill / fastbaps
  A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
  ☆61Updated 2 years ago
• hariszaf / pema
  PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
  ☆27Updated 8 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• computations / root_digger
  A tool to root phylogenies
  ☆19Updated 6 months ago
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• marekborowiec / spruceup
  spruceup
  ☆24Updated 6 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 4 years ago
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 4 months ago
• esayyari / DiscoVista
  ☆39Updated last year
• dportik / SuperCRUNCH
  A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…
  ☆42Updated 10 months ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆22Updated last week
• FePhyFoFum / SortaDate
  ☆17Updated 4 years ago
• Yale-EEB723 / syllabus
  ☆22Updated 5 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆16Updated last year
• BenoitMorel / Asteroid
  ☆11Updated last year
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆56Updated 6 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 6 years ago
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆86Updated 4 months ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 4 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆47Updated last year