Alternatives and similar repositories for bioinf_scripts

Users that are interested in bioinf_scripts are comparing it to the libraries listed below

• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆38Updated last year
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆82Updated 10 months ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated 3 weeks ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 8 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆90Updated last year
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated 2 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 8 months ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆97Updated 3 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆60Updated 3 weeks ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated 2 weeks ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated last year
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 10 months ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
  ☆64Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated last month
• SAMtoBAM / MUMandCo
  MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆75Updated last week
• ThomasArn / genoPlotR_wrapper
  Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…
  ☆14Updated 4 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆60Updated this week
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated 2 months ago
• johnlees / bioinformatics
  Utilities written for bioinformatics
  ☆17Updated 3 years ago
• liangclab / HERA
  ☆77Updated 6 years ago