rtfcoimbra / Coimbra-et-al-2021_CurrBiol
Code used to analyse WGS data of giraffe in Coimbra et al. 2021
☆11Updated last year
Alternatives and similar repositories for Coimbra-et-al-2021_CurrBiol:
Users that are interested in Coimbra-et-al-2021_CurrBiol are comparing it to the libraries listed below
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- MSMC2 Scripts☆23Updated 10 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last week
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆32Updated 10 months ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- Tutorials on evolutionary genomics☆42Updated 2 years ago
- ☆26Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆58Updated 3 months ago
- Sex assignment through coverage☆17Updated 10 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆38Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Genome Annotation Pipeline☆34Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Presentations from the course☆36Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆41Updated 8 months ago
- Hybridization detection using phylogenetic invariants☆44Updated 2 months ago
- ☆18Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆28Updated 3 weeks ago
- ☆18Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Software for ancestry estimation in unrelated individuals☆15Updated this week
- ☆44Updated 5 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆47Updated 6 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆34Updated 2 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago