☆22Jun 8, 2022Updated 3 years ago
Alternatives and similar repositories for findZX
Users that are interested in findZX are comparing it to the libraries listed below
Sorting:
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Jun 26, 2024Updated last year
- plot genome alignment synteny☆21May 25, 2020Updated 5 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 6 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- Newick tree processing☆13Feb 22, 2026Updated last week
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- BuscoPhylo : Easy Busco-based phylogenomic analysis tool☆11Jul 3, 2025Updated 7 months ago
- ☆27Feb 19, 2025Updated last year
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Jun 24, 2025Updated 8 months ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Feb 28, 2022Updated 4 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 2 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆15Sep 2, 2025Updated 6 months ago
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- Pooled Sequencing Analysis for Sex Signal☆14Sep 14, 2021Updated 4 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Sep 5, 2019Updated 6 years ago
- chloroplast genome assembly using long reads data☆14Jul 8, 2025Updated 7 months ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 6 years ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Mar 4, 2024Updated last year
- Dot: An interactive dot plot viewer for comparative genomics☆35May 4, 2023Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Jun 15, 2019Updated 6 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago