Alternatives and similar repositories for Genome-analysis

Users that are interested in Genome-analysis are comparing it to the libraries listed below

• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆27Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆50Updated last month
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆62Updated this week
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆62Updated last year
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆55Updated 2 years ago
• simon19891216 / CentIER
  ☆38Updated 3 months ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆22Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆43Updated last year
• yywyaoyaowu / SolEvo_PotatoDele
  Use hifi to assembly the Sol genome, and dissecting Sol evo
  ☆19Updated 2 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆39Updated last month
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆48Updated 5 months ago
• Jwindler / Assembly_tools
  A collection of tools for Genome Assembly analysis
  ☆21Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆24Updated last week
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆43Updated last week
• tang-shuyuan / HiMT
  An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads
  ☆13Updated this week
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆65Updated 10 months ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆33Updated last month
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆49Updated 4 months ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆40Updated this week
• simon19891216 / GFAP
  a software for annotating plant genes
  ☆22Updated last year
• Joseph7e / MAKER-genome-annotations-tutorial
  Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
  ☆22Updated 2 years ago
• unavailable-2374 / Pan_TE
  PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
  ☆20Updated last week
• NotebookOFXiaoMing / SuperPangenomeofGrapevines
  ☆20Updated last year
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆24Updated last month
• baozg / Potato_C88
  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
  ☆28Updated last year
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆33Updated 2 years ago
• Zhanmengtao / bin
  scripts
  ☆19Updated 6 years ago