Alternatives and similar repositories for Genome-analysis

Users that are interested in Genome-analysis are comparing it to the libraries listed below

• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆65Updated last year
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆66Updated 2 months ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆29Updated last year
• simon19891216 / CentIER
  ☆42Updated 5 months ago
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆43Updated last month
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆40Updated last week
• Zhanmengtao / bin
  scripts
  ☆21Updated 7 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆51Updated 4 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆51Updated 7 months ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆67Updated last year
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆25Updated 3 months ago
• hwc2021 / GSAT
  Graph-based Sequence Assembly Toolkit
  ☆22Updated last year
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆35Updated 2 years ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆35Updated last week
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆57Updated 3 years ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆65Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆25Updated 2 months ago
• simon19891216 / GFAP
  a software for annotating plant genes
  ☆22Updated 2 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆22Updated 2 years ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated 2 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆51Updated 3 weeks ago
• Jwindler / Assembly_tools
  A collection of tools for Genome Assembly analysis
  ☆22Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆45Updated last year
• sinhakrishnendu / babappa
  BAsh-Based Automated Parallel Positive selection Analysis
  ☆16Updated 2 months ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• dongyawu / PangenomeEvolution
  scripts used in Rice Pangenome Projects (Evolution).
  ☆13Updated 2 years ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆44Updated 3 months ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆55Updated 9 months ago