Alternatives and similar repositories for KEGGTools

Users that are interested in KEGGTools are comparing it to the libraries listed below

• Stephane-S / Simplot_PlusPlus
  ☆38Updated last year
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆59Updated last year
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆65Updated 3 weeks ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆64Updated 2 years ago
• Juke34 / awesome-awesomeness-bioinformatics
  A list of awesome awesomeness related to bioinformatics and associated fields
  ☆41Updated 4 months ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆68Updated last month
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 6 months ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆34Updated last month
• zjshi / snv_analysis_almeida2019
  ☆22Updated 5 years ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆35Updated 6 years ago
• chiulab / SURPI-plus-dist
  This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…
  ☆41Updated 5 years ago
• pauloluniyi / VGEA
  VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
  ☆20Updated 3 years ago
• ziyewang / MetaBinner
  ☆56Updated last year
• paulstothard / cgview
  CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
  ☆48Updated last year
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆51Updated 6 months ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆37Updated 7 years ago
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆36Updated 2 years ago
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆78Updated 2 years ago
• SilentGene / Bio-py
  Some useful python scripts for biologists
  ☆32Updated 8 months ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆41Updated 2 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆78Updated last month
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated last month
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 5 months ago
• aziele / pfam_scan
  A tool for scanning FASTA protein sequences against a library of Pfam HMMs
  ☆15Updated 2 years ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆55Updated 3 years ago
• srbehera / DRAGEN_Analysis
  ☆33Updated last year