A tool for representing genomic potential and transcriptomic expression into KEGG pathways
☆61Jul 28, 2024Updated last year
Alternatives and similar repositories for KEGGCharter
Users that are interested in KEGGCharter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Meta-Omics Software for Community Analysis☆37Nov 4, 2024Updated last year
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Mar 18, 2026Updated 3 weeks ago
- UniProt Id Mapping through API☆38Sep 22, 2025Updated 6 months ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 7 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated 3 weeks ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 3 weeks ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- whole genome MLST analysis☆51Mar 27, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- A toolkit for prokaryotic comparative genomics☆51Feb 23, 2026Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆27Apr 5, 2024Updated 2 years ago
- A collection of tools to download and process KEGG database☆41Jun 4, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆104Jun 25, 2023Updated 2 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆193Apr 1, 2026Updated last week
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated last month
- ☆90Mar 25, 2026Updated 2 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- From annotated genomes to metabolic screening in large scale microbiotas☆71Mar 26, 2026Updated 2 weeks ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆209Mar 5, 2026Updated last month
- Efficient phylogenetic tree inference for massive taxonomic datasets☆142Apr 6, 2025Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆44Feb 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- ☆16Jun 9, 2025Updated 10 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated 3 weeks ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Mar 20, 2026Updated 2 weeks ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆15Mar 20, 2026Updated 3 weeks ago