ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
☆34Feb 16, 2024Updated 2 years ago
Alternatives and similar repositories for ANNOgesic
Users that are interested in ANNOgesic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for the computational evaluation of RNA-Seq data☆40Sep 10, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last month
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 5 months ago
- Generate mutated sequence files from a reference genome.☆11Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A comprehensive prokaryotic genome annotation pipeline☆87Jun 3, 2026Updated 2 weeks ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Nov 28, 2023Updated 2 years ago
- RILseq computational protocol☆11Apr 3, 2022Updated 4 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 3 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆53Jun 19, 2023Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆32Dec 28, 2017Updated 8 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆231Apr 27, 2026Updated last month
- Plasmid exploration of bacterial genomes☆26Mar 2, 2022Updated 4 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated last month
- A tool for domain based annotation with databases from the Conserved Domains Database☆30May 26, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- DDBJ Fast Annotation and Submission Tool☆86Jun 12, 2026Updated last week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆39Apr 7, 2026Updated 2 months ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- ☆13Sep 22, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- PanTools☆30May 7, 2019Updated 7 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated last month
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- An updated pipeline for pangenome investigation☆361Jun 2, 2026Updated 2 weeks ago