Sung-Huan / ANNOgesicLinks
ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
☆32Updated last year
Alternatives and similar repositories for ANNOgesic
Users that are interested in ANNOgesic are comparing it to the libraries listed below
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last week
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 6 years ago
- Visualization of the pan-genome output by panX☆65Updated 5 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆40Updated 4 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 3 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Microbiome classification pipeline☆65Updated 6 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 5 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year