Sung-Huan / ANNOgesic
ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
☆30Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for ANNOgesic
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last week
- catalog for long-read sequencing tools☆32Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆58Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆36Updated last year
- Find Unique genomic Regions☆29Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆19Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Quality control plotting for long reads☆10Updated 6 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- ☆27Updated last year
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆25Updated 3 months ago
- Gene-flank analysis tool☆26Updated 6 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 2 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 2 weeks ago
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 4 months ago