Phylogenetic Likelihood Library 2 - experimental
☆11May 12, 2025Updated last year
Alternatives and similar repositories for libpll-2
Users that are interested in libpll-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Gotree: a set of command line tools and an API to manipulate phylogenetic trees.☆150Jul 15, 2026Updated last week
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 5 months ago
- ☆10Oct 15, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11May 10, 2025Updated last year
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- ☆12Nov 9, 2022Updated 3 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆65Mar 15, 2026Updated 4 months ago
- Ebola virus surveillance☆15Aug 28, 2016Updated 9 years ago
- Simple Manipulation Of Trees☆14Aug 16, 2025Updated 11 months ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 7 months ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Various tips and tools for students☆26Sep 6, 2018Updated 7 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆15Dec 10, 2024Updated last year
- Neural networks to model BCR affinity maturation☆15May 11, 2026Updated 2 months ago
- Run shell commands in a scientifically reproducible and robust way☆25Updated this week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆19Oct 6, 2025Updated 9 months ago
- ☆14Mar 18, 2025Updated last year
- Lightweight header-only C++ library for loading and traversing trees☆25Mar 9, 2025Updated last year
- Embedded covariate selection procedure for species distribution modelling☆16Updated this week
- phylogenetics tools for linux (and other mostly posix compliant) computers☆127Apr 18, 2026Updated 3 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Jul 8, 2026Updated 2 weeks ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- An R package for using dplyr on matched tree and data objects☆33Feb 19, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 2 years ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆31Updated this week
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated last month
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆28Jun 20, 2026Updated last month
- A protein language model for learning the SARS-CoV-2 fitness landscape☆16Apr 22, 2025Updated last year