Alternatives and similar repositories for phylobench

Users that are interested in phylobench are comparing it to the libraries listed below

• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated last week
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆46Updated last month
• danlwarren / RWTY
  R We There Yet?
  ☆32Updated 8 months ago
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆43Updated 6 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated 3 months ago
• xflouris / libpll-2
  Phylogenetic Likelihood Library 2 - experimental
  ☆11Updated 6 months ago
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 4 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆72Updated 2 months ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 9 months ago
• thijsjanzen / treestats
  ☆19Updated last week
• lamho86 / phylolm
  ☆36Updated last year
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆57Updated last year
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆25Updated 4 months ago
• sdwfrost / influenza-dynamics-practical-h5n1
  Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
  ☆10Updated 12 years ago
• ropensci-archive / onekp
  ARCHIVED Access sequences from the 1000 Plant Initiative (1KP)
  ☆13Updated last month
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated last month
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆22Updated 5 years ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆73Updated 6 months ago
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆16Updated 7 years ago
• shaunpwilkinson / aphid
  Analysis with Profile Hidden Markov Models
  ☆22Updated last year
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆26Updated 2 months ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated last year
• mdkarcher / phylodyn
  ☆19Updated 4 years ago
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated last year
• dib-lab / SSUsearch
  A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
  ☆10Updated 9 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 4 months ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆19Updated last year
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 6 years ago