emmanuelparadis / phylobench
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for phylobench
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 4 months ago
- babette is an R package to work with BEAST2☆44Updated 4 months ago
- R package to run BEAST2☆11Updated 2 weeks ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 4 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated 7 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆17Updated 9 months ago
- An Amazing Shiny App☆17Updated 3 years ago
- R We There Yet?☆30Updated 2 years ago
- ☆17Updated 6 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆14Updated 5 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- A book for teaching people how to do comparative methods in R☆20Updated last year
- A Toolbox for Manipulating Biological Sequences in R☆20Updated 2 years ago
- Dendrograms for Evolutionary Analysis☆11Updated 4 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated last month
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆53Updated 3 months ago
- analysis of phylogenetics and evolution☆53Updated last week
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 4 months ago
- Phylogenetic ANalyses of DiversificAtion☆24Updated 4 months ago
- STAMPS 2018 course☆16Updated 6 years ago
- Metagenomics calibration R package☆18Updated 2 years ago
- An R-wrapper for lsd2☆9Updated last year
- A model-based visualization method for microbiome data☆16Updated last year
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆13Updated last month
- ☆17Updated 3 years ago
- ☆32Updated 2 weeks ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 6 months ago
- initial commit☆26Updated last year