Alternatives and similar repositories for phylobench:

Users that are interested in phylobench are comparing it to the libraries listed below

• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated this week
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated this week
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆44Updated this week
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 2 years ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆23Updated 6 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 10 months ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆14Updated 6 years ago
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆42Updated 5 years ago
• ropensci / phylogram
  Dendrograms for Evolutionary Analysis
  ☆11Updated 5 years ago
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated 7 months ago
• fmichonneau / phylobase
  An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
  ☆18Updated last year
• lamho86 / phylolm
  ☆33Updated 2 months ago
• ropensci / onekp
  Access sequences from the 1000 Plant Initiative (1KP)
  ☆13Updated last year
• cjbattey / driftR
  population genetic simulations with R and Shiny
  ☆27Updated 2 months ago
• Phylogenetics-Brown-BIOL1425 / phylogeneticbiology
  syllabus and lectures for the course
  ☆8Updated 8 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆68Updated 8 months ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆58Updated last month
• emvolz-phylodynamics / treestructure
  ☆17Updated 8 months ago
• crsl4 / phylogenetics-class
  A course in the theory and practice of phylogenetic inference from DNA sequence data
  ☆28Updated last week
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• duchene / phylomad
  ☆19Updated 7 months ago
• KlausVigo / tanggle
  phylogenetic networks using ggplot2 and ggtree
  ☆11Updated 2 years ago
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 3 years ago
• fkeck / phylosignal
  Exploring the Phylogenetic Signal in Continuous Traits
  ☆16Updated last year
• heibl / ips
  R Interfaces to Phylogenetic Software
  ☆11Updated 9 months ago
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated last year
• bomeara / ComparativeMethodsInR
  A book for teaching people how to do comparative methods in R
  ☆20Updated last year
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆21Updated 4 years ago
• mblstamps / stamps2018
  STAMPS 2018 course
  ☆16Updated 6 years ago