Alternatives and similar repositories for phylobench

Users that are interested in phylobench are comparing it to the libraries listed below

• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated 2 months ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 3 months ago
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆46Updated last month
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆28Updated 4 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 3 years ago
• lamho86 / phylolm
  ☆37Updated 8 months ago
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆44Updated 5 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆56Updated 11 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated 3 weeks ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆69Updated last month
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 3 months ago
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆22Updated 5 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆20Updated 9 months ago
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆24Updated 11 months ago
• mdkarcher / phylodyn
  ☆18Updated 3 years ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 7 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated 2 months ago
• xflouris / libpll-2
  Phylogenetic Likelihood Library 2 - experimental
  ☆11Updated 2 months ago
• thijsjanzen / treestats
  ☆19Updated 3 weeks ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• revbayes / revbayes_tutorial
  Compilation of tutorials for RevBayes
  ☆22Updated 6 years ago
• dib-lab / SSUsearch
  A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
  ☆10Updated 9 years ago
• fmichonneau / phylobase
  An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
  ☆19Updated last year
• mblstamps / stamps2018
  STAMPS 2018 course
  ☆16Updated 6 years ago