Alternatives and similar repositories for timeOmics

Users that are interested in timeOmics are comparing it to the libraries listed below

• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 2 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated last week
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆36Updated last year
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆28Updated 2 months ago
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• andreasmock / MetaboDiff
  ☆31Updated 4 years ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆39Updated 2 weeks ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 2 months ago
• Core-Bioinformatics / bulkAnalyseR
  ☆28Updated last year
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 5 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated last month
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆28Updated 2 months ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 4 months ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• igbb-popescu-lab / NetSeekR
  A networks analysis pipeline for RNASeq time series data
  ☆14Updated 4 years ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated 2 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆40Updated last month
• 123xiaochen / VCFshiny
  ☆29Updated 8 months ago