nf-core pipeline for data submission to ENA
☆22Nov 9, 2026Updated this week
Alternatives and similar repositories for seqsubmit
Users that are interested in seqsubmit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A short list of Nextflow-related branch-lessons for beginners☆10Mar 7, 2025Updated last year
- Ancient Metagenome Assembler For Heavily Damaged Datasets☆12Oct 27, 2025Updated last year
- Orchestrator skill and subagents for creating/updating, testing, and documenting Nextflow nf-core modules☆16Updated this week
- Generation and updating of protein families☆23Oct 26, 2026Updated 2 weeks ago
- Build protein families from sequence clusters by iterative HMM search over very large databases — streaming, deterministic, pyHMMER-based…☆12Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 3 months ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Oct 23, 2026Updated 2 weeks ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 3 weeks ago
- ☆19Aug 25, 2026Updated 2 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- ☆121Oct 16, 2026Updated 3 weeks ago
- ☆13Mar 24, 2025Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Nov 4, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 9 months ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Fast DNA search and [host] depletion using minimizers☆128Updated this week
- Compare the quality of multiple genomes, along with their annotations.☆26Updated this week
- Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows☆74Updated this week
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats.☆12Oct 14, 2026Updated 3 weeks ago
- Flame: Functional enrichment analysis using multiple gene lists☆13May 21, 2025Updated last year
- This is the repository for the variant impact predictor VarIpred.☆12May 2, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Updated this week
- BiBiGrid is a tool for an easy cluster setup inside a cloud environment.☆18Nov 4, 2026Updated last week
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Updated this week
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated 2 weeks ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 3 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆28Mar 25, 2026Updated 7 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- AI skill: publication-ready ggplot2 / plotnine figures, vector PDF, Wong + viridis.☆18Apr 22, 2026Updated 6 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- ☆21Feb 15, 2025Updated last year
- Fast aligner for long reads (Rust): Oxford Nanopore DNA, direct RNA and cDNA, and PacBio HiFi. minimap2-level accuracy, 2.6-8x faster☆18Oct 29, 2026Updated last week
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Data and code used to generate figures to describe SARS-CoV-2 VOI lineage B.1.620 in Europe/Lithuania.☆11Sep 8, 2021Updated 5 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Oct 27, 2026Updated 2 weeks ago
Are these results useful?