Alternatives and similar repositories for examples

Users that are interested in examples are comparing it to the libraries listed below

• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆83Updated 6 years ago
• katholt / plotTree
  ☆68Updated 9 years ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆97Updated last month
• arpcard / amr_curation
  A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…
  ☆63Updated 4 months ago
• dib-lab / dammit
  just annotate it, dammit!
  ☆93Updated 2 years ago
• zhaoyanswill / RAPSearch2
  Reduced Alphabet based Protein similarity Search
  ☆40Updated 5 years ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆58Updated 4 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆51Updated 3 weeks ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 3 years ago
• smirarab / pasta
  PASTA (Practical Alignment using SATe and Transitivity)
  ☆95Updated 8 months ago
• biologyguy / BuddySuite
  Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
  ☆129Updated 4 years ago
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆84Updated 7 years ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆73Updated last year
• kbseah / genome-bin-tools
  Interactive tools for metagenome visualization and binning in R
  ☆27Updated 7 years ago
• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆25Updated 2 years ago
• EBI-Metagenomics / ebi-metagenomics
  Automatically exported from code.google.com/p/ebi-metagenomics
  ☆11Updated 7 years ago
• epruesse / SINA
  SINA - Reference based multiple sequence alignment
  ☆41Updated 5 years ago
• vibbits / phyd3
  Phylogenetic tree viewer based on D3.js
  ☆61Updated last year
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆91Updated 5 months ago
• signaturescience / metscale
  MetScale: snakemake workflows to scale metagenome analyses
  ☆19Updated 8 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated last year
• DenefLab / MicrobeMiseq
  Set of useful functions and scripts for analyzing amplicon Miseq data.
  ☆18Updated 9 years ago
• jwintersinger / kablammo
  Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
  ☆65Updated 3 years ago
• EBI-Metagenomics / MGnifyR
  R package for searching, downloading and analysis of EBI MGnify metagenomics data
  ☆23Updated this week
• inodb / 2014-5-metagenomics-workshop
  Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
  ☆18Updated 11 years ago
• gjospin / PhyloSift
  Phylogenetic and taxonomic analysis for genomes and metagenomes
  ☆82Updated 9 years ago
• lmrodriguezr / nonpareil
  Estimate metagenomic coverage and sequence diversity
  ☆59Updated last month