vinuesa / get_phylomarkersLinks
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
☆59Updated last month
Alternatives and similar repositories for get_phylomarkers
Users that are interested in get_phylomarkers are comparing it to the libraries listed below
Sorting:
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated last week
- ☆56Updated 6 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆94Updated last month
- Gene Absence Presence Identification tool.☆27Updated 10 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- GraftM - Rapid community profiles from metagenomes☆48Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- IslandPath standalone software☆35Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated 6 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Updated 3 years ago
- ☆24Updated 7 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago