R package for distilling functional annotations of bacterial genomes and metagenomes
☆12Feb 27, 2025Updated last year
Alternatives and similar repositories for distillR
Users that are interested in distillR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆67Oct 12, 2026Updated last week
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆13Sep 10, 2021Updated 5 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Oct 12, 2026Updated last week
- MAGinator - Accurate SNV calling and profiling of MAGs☆29Mar 23, 2026Updated 7 months ago
- The binning tool with dynamic contrastive learning and deep language model☆26Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Apr 26, 2026Updated 5 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Amplicon sequencing variants and taxonomic profiling from modern nanopore / HiFi long read amplicons.☆69Oct 10, 2026Updated last week
- Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.☆14Sep 28, 2026Updated 3 weeks ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- ☆13Sep 17, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ⚡🦠🧬 📇 Rapid microbial genomes-to-report pipeline☆75Oct 12, 2026Updated last week
- NanoASV official repo☆18Updated this week
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Oct 1, 2026Updated 3 weeks ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 9 months ago
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Aug 6, 2024Updated 2 years ago
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆28Oct 6, 2026Updated 2 weeks ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated 3 weeks ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jun 9, 2026Updated 4 months ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Jun 5, 2026Updated 4 months ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 4 months ago
- N-Gram Analysis of Biological Sequences☆10Jul 7, 2026Updated 3 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated 2 years ago
- Fast and haplotype-aware assembler☆16Updated this week
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Modeling strain-level variation by gene, phylogeny, or pathway☆14Aug 6, 2026Updated 2 months ago