developerpiru / BEAVRLinks
BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
☆25Updated 3 years ago
Alternatives and similar repositories for BEAVR
Users that are interested in BEAVR are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆27Updated 10 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆30Updated 3 weeks ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last month
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Comprehensive analysis of small RNA sequencing data☆31Updated last month
- ☆36Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- ☆33Updated 3 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 2 months ago
- Python package to annotate and visualize gene fusions.☆63Updated 8 months ago
- Analysis pipeline for the GUIDE-seq assay.☆26Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆28Updated 9 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month