BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
☆26Jan 24, 2022Updated 4 years ago
Alternatives and similar repositories for BEAVR
Users that are interested in BEAVR are comparing it to the libraries listed below
Sorting:
- ☆10Jan 17, 2023Updated 3 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆21Apr 24, 2019Updated 6 years ago
- ☆11Oct 23, 2025Updated 4 months ago
- Shiny app for making and annotating Volcano plots☆25Dec 12, 2025Updated 3 months ago
- This repository provides users with a framework to store, search and visualize biological data.☆27Jun 16, 2025Updated 9 months ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Dec 15, 2020Updated 5 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Nov 3, 2020Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- ☆14May 12, 2023Updated 2 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 5 years ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 3 years ago
- Nextflow Tower CLI tool☆53Mar 12, 2026Updated last week
- ☆12Nov 26, 2025Updated 3 months ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- A deep learning framework for essential gene prediction☆12Aug 17, 2020Updated 5 years ago
- ☆15Oct 10, 2023Updated 2 years ago
- Structural Variants Pipeline for Long Reads☆44Jul 17, 2018Updated 7 years ago
- Scripts and files for the annual Short Read Analysis Workshop☆12Mar 6, 2026Updated 2 weeks ago
- QuPath extension to interactively align images☆26Aug 7, 2025Updated 7 months ago
- Spatial One☆30Oct 31, 2024Updated last year
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- test repository☆29Jul 6, 2023Updated 2 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Transposon annotation tool "resonaTE" (part of TransposonUltimate)☆18Mar 4, 2022Updated 4 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated last year
- This is an official replacement for https://bitbucket.org/feeldead/gfold☆10Aug 30, 2020Updated 5 years ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆33May 3, 2021Updated 4 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 6 years ago
- Analysis pipeline for the GUIDE-seq assay.☆29Aug 1, 2025Updated 7 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Command Line Interface (CLI) to export METS/ALTO documents to other formats.☆13Apr 25, 2022Updated 3 years ago